Thap6 Pseudogene Detail

Summary

• Symbol
  Thap6
• Name
  THAP domain containing 6
• Synonyms
  4930534K21Rik

• Feature Type
  pseudogene
• IDs
  MGI:1922436
  NCBI Gene: 381650
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr5:92111192-92119925 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 45.62 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  298 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922436	pseudogene	Chr5:92110741-92119996 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039871	pseudogene	Chr5:93095525-93122049 (+)
A/J	MGP_AJ_G0039877	pseudogene	Chr5:89420205-89429730 (+)
AKR/J	MGP_AKRJ_G0039802	pseudogene	Chr5:92338533-92349458 (+)
BALB/cJ	MGP_BALBcJ_G0039855	pseudogene	Chr5:90304306-90314091 (+)
C3H/HeJ	MGP_C3HHeJ_G0039500	pseudogene	Chr5:92744534-92755131 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040421	pseudogene	Chr5:96814560-96826723 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037015	pseudogene	Chr5:85071002-85080826 (+)
CAST/EiJ	MGP_CASTEiJ_G0038606	pseudogene	Chr5:92117744-92129790 (+)
CBA/J	MGP_CBAJ_G0039468	pseudogene	Chr5:100145006-100154416 (+)
DBA/2J	MGP_DBA2J_G0039673	pseudogene	Chr5:89465646-89475257 (+)
FVB/NJ	MGP_FVBNJ_G0039631	pseudogene	Chr5:88317268-88326933 (+)
LP/J	MGP_LPJ_G0039710	pseudogene	Chr5:93480058-93490269 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039627	pseudogene	Chr5:105091551-105102373 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040520	pseudogene	Chr5:91873449-91883110 (+)
PWK/PhJ	MGP_PWKPhJ_G0038279	pseudogene	Chr5:88523797-88535263 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038023	pseudogene	Chr5:91229028-91239487 (+)
WSB/EiJ	MGP_WSBEiJ_G0038837	pseudogene	Chr5:92328231-92339366 (+)

Homology

• Gene Tree
  Thap6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Thap6
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  735
• Tissues
  29
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000102644 (Evidence)
• NCBI Gene
  381650

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102644	Ensembl Gene Model | MGI Sequence Detail	8734	C57BL/6J
transcript	ENSMUST00000191860	Ensembl | MGI Sequence Detail	3151	Not Applicable

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2140886

References

• Summaries
  All 22

  Developmental Gene Expression 1

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86

TSS for Thap6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47269	Chr5:92110284-92110287 (+)	-906 bp
Tssr47270	Chr5:92110299-92110304 (+)	-890 bp
Tssr47271	Chr5:92110325-92110332 (+)	-863 bp
Tssr47272	Chr5:92110734-92110769 (+)	-440 bp
Tssr47273	Chr5:92110781-92110801 (+)	-401 bp
Tssr47274	Chr5:92110803-92110817 (+)	-382 bp
Tssr47275	Chr5:92111176-92111186 (+)	-11 bp
Tssr47276	Chr5:92111206-92111218 (+)	20 bp