4930532M18Rik Gene Detail

Summary

• Symbol
  4930532M18Rik
• Name
  RIKEN cDNA 4930532M18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922483
  NCBI Gene: 75233
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:154131435-154146162 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  512 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922483	lncRNA gene	Chr1:154131435-154146162 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005004	lincRNA gene	Chr1:159137673-159152307 (+)
A/J	MGP_AJ_G0004986	lincRNA gene	Chr1:152717207-152731885 (+)
AKR/J	MGP_AKRJ_G0004964	lincRNA gene	Chr1:157446139-157460806 (+)
BALB/cJ	MGP_BALBcJ_G0004968	lincRNA gene	Chr1:153260119-153274783 (+)
C3H/HeJ	MGP_C3HHeJ_G0004916	lincRNA gene	Chr1:157568842-157584201 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005118	lincRNA gene	Chr1:164627629-164642275 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004529	lincRNA gene	Chr1:144983704-144997063 (+)
CAST/EiJ	MGP_CASTEiJ_G0004864	lincRNA gene	Chr1:157074298-157090183 (+)
CBA/J	MGP_CBAJ_G0004907	lincRNA gene	Chr1:170438655-170453320 (+)
DBA/2J	MGP_DBA2J_G0004926	lincRNA gene	Chr1:151721340-151737187 (+)
FVB/NJ	MGP_FVBNJ_G0004947	lincRNA gene	Chr1:150190355-150205369 (+)
LP/J	MGP_LPJ_G0005004	lincRNA gene	Chr1:160271263-160286794 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004931	lincRNA gene	Chr1:178054771-178074774 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005123	lincRNA gene	Chr1:157237358-157251988 (+)
PWK/PhJ	MGP_PWKPhJ_G0004816	lincRNA gene	Chr1:150789557-150804493 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004742	lincRNA gene	Chr1:155996435-156011804 (+)
WSB/EiJ	MGP_WSBEiJ_G0004911	lincRNA gene	Chr1:157307850-157323406 (+)

Homology

• Gene Tree
  4930532M18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 4930532M18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000100221 (Evidence)
• NCBI Gene
  75233

Representative Sequences			Length	Strain/Species
genomic	75233	NCBI Gene Model | MGI Sequence Detail	14728	C57BL/6J
transcript	NR_108050	RefSeq | MGI Sequence Detail	481	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930532M18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9519	Chr1:154132728-154132730 (+)	1,294 bp