4930556I23Rik Gene Detail

Summary

• Symbol
  4930556I23Rik
• Name
  RIKEN cDNA 4930556I23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922520
  NCBI Gene: 102637491
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:37653588-37654454 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 15.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922520	lncRNA gene	Chr1:37653340-37654454 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002663	antisense lncRNA gene	Chr1:36250585-36251698 (+)
A/J	MGP_AJ_G0002639	antisense lncRNA gene	Chr1:35240806-35241919 (+)
AKR/J	MGP_AKRJ_G0002619	antisense lncRNA gene	Chr1:35741211-35742324 (+)
BALB/cJ	MGP_BALBcJ_G0002625	antisense lncRNA gene	Chr1:34914312-34915425 (+)
C3H/HeJ	MGP_C3HHeJ_G0002585	antisense lncRNA gene	Chr1:35971920-35973033 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002769	antisense lncRNA gene	Chr1:37836013-37837126 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002316	antisense lncRNA gene	Chr1:32254325-32255445 (+)
CAST/EiJ	MGP_CASTEiJ_G0002558	antisense lncRNA gene	Chr1:35832541-35833654 (+)
CBA/J	MGP_CBAJ_G0002580	antisense lncRNA gene	Chr1:38859180-38860292 (+)
DBA/2J	MGP_DBA2J_G0002585	antisense lncRNA gene	Chr1:34564486-34565599 (+)
FVB/NJ	MGP_FVBNJ_G0002605	antisense lncRNA gene	Chr1:34096744-34097857 (+)
LP/J	MGP_LPJ_G0002665	antisense lncRNA gene	Chr1:36592094-36593207 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002596	antisense lncRNA gene	Chr1:41045478-41046591 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002774	antisense lncRNA gene	Chr1:35804848-35805961 (+)
PWK/PhJ	MGP_PWKPhJ_G0002515	antisense lncRNA gene	Chr1:34334540-34335648 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002469	antisense lncRNA gene	Chr1:35745418-35746531 (+)
WSB/EiJ	MGP_WSBEiJ_G0002587	antisense lncRNA gene	Chr1:35763200-35764313 (+)

Homology

• Gene Tree
  4930556I23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930556I23Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000089767 (Evidence)
• NCBI Gene
  102637491

Representative Sequences			Length	Strain/Species
genomic	102637491	NCBI Gene Model | MGI Sequence Detail	867	C57BL/6J
transcript	AK016146	GenBank | ENA | DDBJ | MGI Sequence Detail	572	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930556I23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6317	Chr1:37653490-37653501 (+)	-92 bp
Tssr6318	Chr1:37653520-37653530 (+)	-63 bp