Mettl5os Gene Detail

Summary

• Symbol
  Mettl5os
• Name
  methyltransferase 5, opposite strand
• Synonyms
  4930550G17Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1922537
  NCBI Gene: 100329140
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:69716072-69718499 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 40.95 cM, cytoband C3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922537	antisense lncRNA gene	Chr2:69716072-69718499 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0003561	antisense lncRNA gene	Chr2:67189716-67192096 (+)
AKR/J	MGP_AKRJ_G0003539	antisense lncRNA gene	Chr2:69009498-69011873 (+)
BALB/cJ	MGP_BALBcJ_G0003550	antisense lncRNA gene	Chr2:67350334-67352658 (+)
C3H/HeJ	MGP_C3HHeJ_G0003497	antisense lncRNA gene	Chr2:69241884-69244879 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003688	antisense lncRNA gene	Chr2:71998558-72000942 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003197	antisense lncRNA gene	Chr2:64415469-64418937 (+)
CAST/EiJ	MGP_CASTEiJ_G0003460	antisense lncRNA gene	Chr2:69356004-69357410 (+)
CBA/J	MGP_CBAJ_G0003494	antisense lncRNA gene	Chr2:74654176-74657077 (+)
DBA/2J	MGP_DBA2J_G0003502	antisense lncRNA gene	Chr2:66822254-66824553 (+)
FVB/NJ	MGP_FVBNJ_G0003522	antisense lncRNA gene	Chr2:66204230-66206521 (+)
LP/J	MGP_LPJ_G0003575	antisense lncRNA gene	Chr2:69746890-69749199 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003510	antisense lncRNA gene	Chr2:76717542-76719954 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003690	antisense lncRNA gene	Chr2:69093412-69097021 (+)
PWK/PhJ	MGP_PWKPhJ_G0003415	antisense lncRNA gene	Chr2:66673576-66676243 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003360	antisense lncRNA gene	Chr2:69327633-69329952 (+)
WSB/EiJ	MGP_WSBEiJ_G0003495	antisense lncRNA gene	Chr2:69524466-69528218 (+)

Homology

• Gene Tree
  Mettl5os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Mettl5os
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085735 (Evidence)
• NCBI Gene
  100329140

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085735	Ensembl Gene Model | MGI Sequence Detail	2428	C57BL/6J
transcript	ENSMUST00000129114	Ensembl | MGI Sequence Detail	667	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582