4930597O21Rik Gene Detail

Summary

• Symbol
  4930597O21Rik
• Name
  RIKEN cDNA 4930597O21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922623
  NCBI Gene: 75373
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:66871636-66873505 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922623	lncRNA gene	Chr6:66870619-66901160 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015638	unclassified non-coding RNA gene	Chr6:66861303-66864213 (-)
A/J	MGP_AJ_G0015614	unclassified non-coding RNA gene	Chr6:63984478-63986315 (-)
AKR/J	MGP_AKRJ_G0015577	unclassified non-coding RNA gene	Chr6:65982601-65985818 (-)
BALB/cJ	MGP_BALBcJ_G0015576	unclassified non-coding RNA gene	Chr6:64349209-64351221 (-)
C3H/HeJ	MGP_C3HHeJ_G0015404	unclassified non-coding RNA gene	Chr6:118158628-118160448 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016029	unclassified non-coding RNA gene	Chr6:68458784-68460631 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013762	unclassified non-coding RNA gene	Chr6:61159713-61161471 (-)
CAST/EiJ	MGP_CASTEiJ_G0014954	unclassified non-coding RNA gene	Chr6:66272312-66274125 (-)
CBA/J	MGP_CBAJ_G0015379	unclassified non-coding RNA gene	Chr6:71297743-71299515 (-)
DBA/2J	MGP_DBA2J_G0015473	unclassified non-coding RNA gene	Chr6:63638739-63640640 (-)
FVB/NJ	MGP_FVBNJ_G0015480	unclassified non-coding RNA gene	Chr6:63150551-63152356 (-)
LP/J	MGP_LPJ_G0015554	unclassified non-coding RNA gene	Chr6:66784025-66786716 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015503	unclassified non-coding RNA gene	Chr6:75000074-75002724 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016071	unclassified non-coding RNA gene	Chr6:65899351-65902217 (-)
PWK/PhJ	MGP_PWKPhJ_G0014737	unclassified non-coding RNA gene	Chr6:62837484-62839709 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014525	unclassified non-coding RNA gene	Chr6:65471206-65472969 (-)
WSB/EiJ	MGP_WSBEiJ_G0015058	unclassified non-coding RNA gene	Chr6:66219072-66220880 (-)

Homology

• Gene Tree
  4930597O21Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000053442 (Evidence)
• NCBI Gene
  75373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053442	Ensembl Gene Model | MGI Sequence Detail	1870	C57BL/6J
transcript	ENSMUST00000065878	Ensembl | MGI Sequence Detail	984	Not Applicable
polypeptide	Q8C2X6	UniProt | EBI | MGI Sequence Detail	171	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930597O21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61230	Chr6:66873499-66873500 (-)	5 bp