1700012J22Rik Gene Detail

Summary

• Symbol
  1700012J22Rik
• Name
  RIKEN cDNA 1700012J22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922746
  NCBI Gene: 75496
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:99778482-99779311 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922746	lncRNA gene	Chr13:99778482-99779311 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000852	unclassified gene	Chr13:101450589-101451418 (+)
A/J	MGP_AJ_G0000828	unclassified gene	Chr13:97548571-97549400 (+)
AKR/J	MGP_AKRJ_G0000817	unclassified gene	Chr13:100533188-100534017 (+)
BALB/cJ	MGP_BALBcJ_G0000820	unclassified gene	Chr13:98252706-98253535 (+)
C3H/HeJ	MGP_C3HHeJ_G0000805	unclassified gene	Chr13:100256684-100257513 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000935	unclassified gene	Chr13:104466540-104467369 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000669	unclassified gene	Chr13:93277626-93278455 (+)
CAST/EiJ	MGP_CASTEiJ_G0000797	unclassified gene	Chr13:99685335-99686164 (+)
CBA/J	MGP_CBAJ_G0000796	unclassified gene	Chr13:108604876-108605705 (+)
DBA/2J	MGP_DBA2J_G0000800	unclassified gene	Chr13:97318936-97319765 (+)
FVB/NJ	MGP_FVBNJ_G0000812	unclassified gene	Chr13:96062174-96063003 (+)
LP/J	MGP_LPJ_G0000857	unclassified gene	Chr13:101543712-101544541 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000804	unclassified gene	Chr13:108892263-108893092 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000929	unclassified gene	Chr13:99978475-99979304 (+)
PWK/PhJ	MGP_PWKPhJ_G0000750	unclassified gene	Chr13:96139966-96140795 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000723	unclassified gene	Chr13:96277958-96278780 (+)
WSB/EiJ	MGP_WSBEiJ_G0000804	unclassified gene	Chr13:100428151-100428980 (+)

Homology

• Gene Tree
  1700012J22Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103545 (Evidence)
• NCBI Gene
  75496

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103545	Ensembl Gene Model | MGI Sequence Detail	830	C57BL/6J
transcript	AK005917	GenBank | ENA | DDBJ | MGI Sequence Detail	833	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700012J22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120836	Chr13:99778459-99778465 (+)	-20 bp
Tssr120837	Chr13:99778491-99778500 (+)	14 bp