1700010K23Rik Gene Detail

Summary

• Symbol
  1700010K23Rik
• Name
  RIKEN cDNA 1700010K23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922751
  NCBI Gene: 75501
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:66454004-66461512 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 37.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922751	lncRNA gene	Chr16:66454004-66461512 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015323	unclassified non-coding RNA gene	Chr16:66234627-66242137 (+)
A/J	MGP_AJ_G0015298	unclassified non-coding RNA gene	Chr16:63374317-63381827 (+)
AKR/J	MGP_AKRJ_G0015261	unclassified non-coding RNA gene	Chr16:65378228-65385720 (+)
BALB/cJ	MGP_BALBcJ_G0015261	unclassified non-coding RNA gene	Chr16:63597500-63605010 (+)
C3H/HeJ	MGP_C3HHeJ_G0015085	unclassified non-coding RNA gene	Chr16:65669349-65676853 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015715	unclassified non-coding RNA gene	Chr16:68199555-68207061 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013457	unclassified non-coding RNA gene	Chr16:62324516-62331993 (+)
CAST/EiJ	MGP_CASTEiJ_G0014636	unclassified non-coding RNA gene	Chr16:65886587-65894042 (+)
CBA/J	MGP_CBAJ_G0015064	unclassified non-coding RNA gene	Chr16:71114727-71122236 (+)
DBA/2J	MGP_DBA2J_G0015159	unclassified non-coding RNA gene	Chr16:63161769-63169082 (+)
FVB/NJ	MGP_FVBNJ_G0015166	unclassified non-coding RNA gene	Chr16:62730874-62738368 (+)
LP/J	MGP_LPJ_G0015239	unclassified non-coding RNA gene	Chr16:66046779-66054941 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015192	unclassified non-coding RNA gene	Chr16:72448516-72458198 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015755	unclassified non-coding RNA gene	Chr16:65467542-65475050 (+)
PWK/PhJ	MGP_PWKPhJ_G0014426	unclassified non-coding RNA gene	Chr16:63315417-63322897 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014214	unclassified non-coding RNA gene	Chr16:65140680-65148190 (+)
WSB/EiJ	MGP_WSBEiJ_G0014743	unclassified non-coding RNA gene	Chr16:65520503-65527966 (+)

Homology

• Gene Tree
  1700010K23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving 1700010K23Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000092599 (Evidence)
• NCBI Gene
  75501

Representative Sequences			Length	Strain/Species
genomic	75501	NCBI Gene Model | MGI Sequence Detail	7509	C57BL/6J
transcript	NR_040512	RefSeq | MGI Sequence Detail	376	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76

TSS for 1700010K23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138930	Chr16:66453993-66454028 (+)	7 bp