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1700013H16Rik Gene Detail
Summary
  • Symbol
    1700013H16Rik
  • Name
    RIKEN cDNA 1700013H16 gene
  • Synonyms
    Slx2, Xlr6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922764
    NCBI Gene: 75514
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:52744868-52759798 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 30.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    309 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922764
 protein coding gene ChrX:52744868-52759936 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035730
 protein coding gene ChrX:49016125-49032885 (-)
A/J MGP_AJ_G0035712
 protein coding gene ChrX:48911458-48925742 (-)
AKR/J MGP_AKRJ_G0035633
 protein coding gene ChrX:50274585-50296704 (-)
BALB/cJ MGP_BALBcJ_G0035699
 protein coding gene ChrX:48384736-48399123 (-)
C3H/HeJ MGP_C3HHeJ_G0035402
 protein coding gene ChrX:49295873-49310389 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036228
 protein coding gene ChrX:50197885-50214552 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033080
 protein coding gene ChrX:46300575-46312512 (-)
CAST/EiJ MGP_CASTEiJ_G0034695
 protein coding gene ChrX:36579266-36597626 (-)
CBA/J MGP_CBAJ_G0035376
 protein coding gene ChrX:51592328-51606954 (-)
DBA/2J MGP_DBA2J_G0035531
 protein coding gene ChrX:48640650-48655462 (-)
FVB/NJ MGP_FVBNJ_G0035480
 protein coding gene ChrX:48262403-48277405 (-)
LP/J MGP_LPJ_G0035619
 protein coding gene ChrX:49402230-49417124 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035519
 protein coding gene ChrX:53129850-53144217 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036246
 protein coding gene ChrX:48911209-48929275 (-)
PWK/PhJ MGP_PWKPhJ_G0034393
 protein coding gene ChrX:36120658-36134244 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034236
 protein coding gene ChrX:37399408-37413557 (-)
WSB/EiJ MGP_WSBEiJ_G0034838
 protein coding gene ChrX:48476468-48492925 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    3 phenotype references
Hemizygous null male and homozygous null female mice display normal fertility. Males exhibit normal body weight and show no detectable abnormalities in testis or sperm morphology, spermatogenesis or sperm motility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    831
  • Tissues
    28
  • cDNA Data
    4
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054727 Ensembl Gene Model | MGI Sequence Detail 14931 C57BL/6J ±  kb
transcript ENSMUST00000067940 Ensembl | MGI Sequence Detail 1224 Not Applicable  
polypeptide ENSMUSP00000063474 Ensembl | MGI Sequence Detail 291 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
    IPR006888 XLR/SYCP3/FAM9 domain
Molecular
Reagents
less
  • All nucleic 7
    cDNA 4
    Primer pair 2
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:282929 Li M, et al., CRISPR/Cas9 Promotes Functional Study of Testis Specific X-Linked Gene In Vivo. PLoS One. 2015;10(11):e0143148
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory