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Tslrn1 Gene Detail
Summary
  • Symbol
    Tslrn1
  • Name
    testis specific long noncoding RNA 1
  • Synonyms
    1700019B21Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1922795
    NCBI Gene: 75545
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:61554145-61570617 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    636 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922795
 lncRNA gene ChrX:61554145-61570617 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007540
 lincRNA gene ChrX:57925070-57938476 (-)
A/J MGP_AJ_G0007537
 lincRNA gene ChrX:58134156-58153239 (-)
AKR/J MGP_AKRJ_G0007508
 lincRNA gene ChrX:59712215-59769761 (-)
BALB/cJ MGP_BALBcJ_G0007514
 lincRNA gene ChrX:57437059-57447418 (-)
C3H/HeJ MGP_C3HHeJ_G0007459
 lincRNA gene ChrX:58502509-58520272 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007684
 lincRNA gene ChrX:59530506-59564170 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006865
 lincRNA gene ChrX:57772794-57778477 (-)
CAST/EiJ MGP_CASTEiJ_G0007362
 lincRNA gene ChrX:44192045-44241909 (-)
CBA/J MGP_CBAJ_G0007440
 lincRNA gene ChrX:61274320-61280085 (-)
DBA/2J MGP_DBA2J_G0007466
 lincRNA gene ChrX:57675295-57688804 (-)
FVB/NJ MGP_FVBNJ_G0007482
 lincRNA gene ChrX:57189698-57216473 (-)
LP/J MGP_LPJ_G0007546
 lincRNA gene ChrX:58562088-58583621 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007463
 lincRNA gene ChrX:63004645-63032486 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007690
 lincRNA gene ChrX:57931311-57957141 (-)
PWK/PhJ MGP_PWKPhJ_G0007303
 lincRNA gene ChrX:42338846-42375407 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007207
 lincRNA gene ChrX:45081721-45106939 (-)
WSB/EiJ MGP_WSBEiJ_G0007422
 lincRNA gene ChrX:57378474-57395731 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 2 alleles in 2 genetic backgrounds
    2 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
In male mice, knockout reduces sperm counts by about 20%.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 75545 NCBI Gene Model | MGI Sequence Detail 16473 C57BL/6J ±  kb
transcript NR_045442 RefSeq | MGI Sequence Detail 747 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:5904337
References
more
  • Summaries
    All 9
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:245211 Wichman L, et al., Dynamic expression of long noncoding RNAs reveals their potential roles in spermatogenesis and fertility. Biol Reprod. 2017 Aug 01;97(2):313-323
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory