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Ccdc172 Gene Detail
Summary
  • Symbol
    Ccdc172
  • Name
    coiled-coil domain containing 172
  • Synonyms
    1700011F14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922895
    NCBI Gene: 75645
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:58500424-58541517 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 54.35 cM, cytoband D3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922895
 protein coding gene Chr19:58500416-58546504 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025277
 protein coding gene Chr19:58988152-59030796 (+)
A/J MGP_AJ_G0025253
 protein coding gene Chr19:56089680-56130207 (+)
AKR/J MGP_AKRJ_G0025222
 protein coding gene Chr19:57848915-57889851 (+)
BALB/cJ MGP_BALBcJ_G0025248
 protein coding gene Chr19:56160553-56201081 (+)
C3H/HeJ MGP_C3HHeJ_G0025008
 protein coding gene Chr19:58091010-58131605 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025691
 protein coding gene Chr19:60405922-60448919 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023103
 protein coding gene Chr19:54982026-55025979 (+)
CAST/EiJ MGP_CASTEiJ_G0024473
 protein coding gene Chr19:58158345-58207818 (+)
CBA/J MGP_CBAJ_G0024988
 protein coding gene Chr19:63351079-63393142 (+)
DBA/2J MGP_DBA2J_G0025120
 protein coding gene Chr19:55843024-55883932 (+)
FVB/NJ MGP_FVBNJ_G0025081
 protein coding gene Chr19:55579315-55620049 (+)
LP/J MGP_LPJ_G0025206
 protein coding gene Chr19:58849982-58894004 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025114
 protein coding gene Chr19:62607645-62655047 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025749
 protein coding gene Chr19:58075661-58117258 (+)
PWK/PhJ MGP_PWKPhJ_G0024221
 protein coding gene Chr19:55837706-55884201 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024024
 protein coding gene Chr19:56743685-56782731 (+)
WSB/EiJ MGP_WSBEiJ_G0024543
 protein coding gene Chr19:58190175-58235457 (+)



Homology
more
  • Human Ortholog
    CCDC172, coiled-coil domain containing 172
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC172, coiled-coil domain containing 172
  • Synonyms
    C10orf96
  • Links
    NCBI Gene ID: 374355
    neXtProt AC: NX_P0C7W6
    UniProt: P0C7W6

  • Chr Location
    10q25.3; chr10:116324448-116380029 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025090 Ensembl Gene Model | MGI Sequence Detail 41094 C57BL/6J ±  kb
transcript ENSMUST00000069419 Ensembl | MGI Sequence Detail 1009 Not Applicable  
polypeptide ENSMUSP00000068972 Ensembl | MGI Sequence Detail 267 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory