2310058D17Rik Gene Detail

Summary

• Symbol
  2310058D17Rik
• Name
  RIKEN cDNA 2310058D17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922944
  NCBI Gene: 75694
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:58856574-58868907 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 36.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  456 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922944	lncRNA gene	Chr11:58856574-58868907 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015173	unclassified non-coding RNA gene	Chr11:58747698-58759971 (-)
A/J	MGP_AJ_G0015147	unclassified non-coding RNA gene	Chr11:56507157-56519457 (-)
AKR/J	MGP_AKRJ_G0015110	unclassified non-coding RNA gene	Chr11:58407772-58420112 (-)
BALB/cJ	MGP_BALBcJ_G0015109	unclassified non-coding RNA gene	Chr11:56876455-56888728 (-)
C3H/HeJ	MGP_C3HHeJ_G0014933	unclassified non-coding RNA gene	Chr11:58294980-58315205 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015566	unclassified non-coding RNA gene	Chr11:60623561-60635863 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013310	unclassified non-coding RNA gene	Chr11:53779659-53792417 (-)
CAST/EiJ	MGP_CASTEiJ_G0014486	unclassified non-coding RNA gene	Chr11:58412449-58424710 (-)
CBA/J	MGP_CBAJ_G0014912	unclassified non-coding RNA gene	Chr11:63268424-63280751 (-)
DBA/2J	MGP_DBA2J_G0015005	unclassified non-coding RNA gene	Chr11:56184933-56197674 (-)
FVB/NJ	MGP_FVBNJ_G0015017	unclassified non-coding RNA gene	Chr11:55832861-55845282 (-)
LP/J	MGP_LPJ_G0015086	unclassified non-coding RNA gene	Chr11:59363384-59375657 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015043	unclassified non-coding RNA gene	Chr11:64423176-64436542 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015605	unclassified non-coding RNA gene	Chr11:58412445-58426620 (-)
PWK/PhJ	MGP_PWKPhJ_G0014278	unclassified non-coding RNA gene	Chr11:56770133-56782666 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014065	unclassified non-coding RNA gene	Chr11:58220448-58232848 (-)
WSB/EiJ	MGP_WSBEiJ_G0014589	unclassified non-coding RNA gene	Chr11:58097762-58111029 (-)

Homology

• Gene Tree
  2310058D17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  8
• Genomic Mutations
  1 involving 2310058D17Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  15

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085379 (Evidence)
• NCBI Gene
  75694

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085379	Ensembl Gene Model | MGI Sequence Detail	12334	C57BL/6J
transcript	ENSMUST00000131221	Ensembl | MGI Sequence Detail	3232	Not Applicable

Molecular
Reagents

• All nucleic 15

  cDNA 15

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310058D17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108184	Chr11:58868836-58868891 (-)	43 bp