4933415A04Rik Gene Detail

Summary

• Symbol
  4933415A04Rik
• Name
  RIKEN cDNA 4933415A04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922977
  NCBI Gene: 75727
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:43477867-43479875 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 25.81 cM, cytoband B1.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922977	lncRNA gene	Chr11:43477867-43479875 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018175	protein coding gene	Chr11:42363569-42365570 (+)
A/J	MGP_AJ_G0018147	protein coding gene	Chr11:40749660-40751635 (+)
AKR/J	MGP_AKRJ_G0018111	protein coding gene	Chr11:41942310-41944302 (+)
BALB/cJ	MGP_BALBcJ_G0018116	protein coding gene	Chr11:40922002-40924001 (+)
C3H/HeJ	MGP_C3HHeJ_G0017929	protein coding gene	Chr11:41971126-41973126 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018570	protein coding gene	Chr11:43652141-43654180 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016225	protein coding gene	Chr11:38805250-38807288 (+)
CAST/EiJ	MGP_CASTEiJ_G0017493	protein coding gene	Chr11:42022072-42024041 (+)
CBA/J	MGP_CBAJ_G0017902	protein coding gene	Chr11:45675655-45677657 (+)
DBA/2J	MGP_DBA2J_G0018012	protein coding gene	Chr11:40526051-40528041 (+)
FVB/NJ	MGP_FVBNJ_G0018006	protein coding gene	Chr11:40212125-40214123 (+)
LP/J	MGP_LPJ_G0018084	protein coding gene	Chr11:42607652-42609639 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018030	protein coding gene	Chr11:47322511-47324589 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018609	protein coding gene	Chr11:42095181-42097175 (+)
PWK/PhJ	MGP_PWKPhJ_G0017274	protein coding gene	Chr11:40548520-40550531 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017066	protein coding gene	Chr11:41890591-41892600 (+)
WSB/EiJ	MGP_WSBEiJ_G0017542	protein coding gene	Chr11:41738509-41740494 (+)

Homology

• Gene Tree
  4933415A04Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000045877 (Evidence)
• NCBI Gene
  75727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045877	Ensembl Gene Model | MGI Sequence Detail	2009	C57BL/6J
transcript	ENSMUST00000056256	Ensembl | MGI Sequence Detail	2009	Not Applicable
polypeptide	Q9D443	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933415A04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101000	Chr11:43477895-43477899 (+)	30 bp