Bloc1s6os Gene Detail

Summary

• Symbol
  Bloc1s6os
• Name
  biogenesis of lysosomal organelles complex-1, subunit 6, pallidin, opposite strand
• Synonyms
  4930580A09Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1923165
  NCBI Gene: 75915
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:122574858-122580282 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 60.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923165	antisense lncRNA gene	Chr2:122574858-122580334 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003627	antisense lncRNA gene	Chr2:125775784-125782425 (-)
A/J	MGP_AJ_G0003609	antisense lncRNA gene	Chr2:120640895-120645989 (-)
AKR/J	MGP_AKRJ_G0003587	antisense lncRNA gene	Chr2:124095447-124100541 (-)
BALB/cJ	MGP_BALBcJ_G0003598	antisense lncRNA gene	Chr2:120933628-120938722 (-)
C3H/HeJ	MGP_C3HHeJ_G0003545	antisense lncRNA gene	Chr2:124575650-124580745 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003737	antisense lncRNA gene	Chr2:129892545-129897617 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003245	antisense lncRNA gene	Chr2:115560284-115565470 (-)
CAST/EiJ	MGP_CASTEiJ_G0003508	antisense lncRNA gene	Chr2:124821174-124826059 (-)
CBA/J	MGP_CBAJ_G0003542	antisense lncRNA gene	Chr2:134504326-134509420 (-)
DBA/2J	MGP_DBA2J_G0003550	antisense lncRNA gene	Chr2:120073512-120083469 (-)
FVB/NJ	MGP_FVBNJ_G0003570	antisense lncRNA gene	Chr2:118830680-118835761 (-)
LP/J	MGP_LPJ_G0003627	antisense lncRNA gene	Chr2:126019693-126025541 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003558	antisense lncRNA gene	Chr2:138683671-138689186 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003738	antisense lncRNA gene	Chr2:124144981-124150075 (-)
PWK/PhJ	MGP_PWKPhJ_G0003463	antisense lncRNA gene	Chr2:119644299-119649310 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003406	antisense lncRNA gene	Chr2:123223471-123230888 (-)
WSB/EiJ	MGP_WSBEiJ_G0003542	antisense lncRNA gene	Chr2:125023393-125029124 (-)

Homology

• Gene Tree
  Bloc1s6os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Bloc1s6os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085633 (Evidence)
• NCBI Gene
  75915

Representative Sequences			Length	Strain/Species
genomic	75915	NCBI Gene Model | MGI Sequence Detail	5425	C57BL/6J
transcript	NR_156706	RefSeq | MGI Sequence Detail	1048	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Bloc1s6os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25989	Chr2:122580265-122580285 (-)	7 bp