4930594O21Rik Gene Detail

Summary

• Symbol
  4930594O21Rik
• Name
  RIKEN cDNA 4930594O21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923197
  NCBI Gene: 75947
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:37668062-37669425 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923197	lncRNA gene	Chr3:37664040-37669425 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006162	lincRNA gene	Chr3:35476423-35477787 (+)
A/J	MGP_AJ_G0006154	lincRNA gene	Chr3:34758021-34759387 (+)
AKR/J	MGP_AKRJ_G0006130	lincRNA gene	Chr3:35414154-35415518 (+)
BALB/cJ	MGP_BALBcJ_G0006130	lincRNA gene	Chr3:34515535-34516898 (+)
C3H/HeJ	MGP_C3HHeJ_G0006080	lincRNA gene	Chr3:35465386-35466752 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006292	lincRNA gene	Chr3:37113079-37114442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005603	lincRNA gene	Chr3:32439966-32441318 (+)
CAST/EiJ	MGP_CASTEiJ_G0006015	lincRNA gene	Chr3:35356118-35357482 (+)
CBA/J	MGP_CBAJ_G0006065	lincRNA gene	Chr3:38117477-38118843 (+)
DBA/2J	MGP_DBA2J_G0006084	lincRNA gene	Chr3:34202501-34203865 (+)
FVB/NJ	MGP_FVBNJ_G0006108	lincRNA gene	Chr3:33644563-33645926 (+)
LP/J	MGP_LPJ_G0006166	lincRNA gene	Chr3:36262386-36263750 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006098	lincRNA gene	Chr3:40604822-40606186 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006296	lincRNA gene	Chr3:35264875-35266239 (+)
PWK/PhJ	MGP_PWKPhJ_G0005960	lincRNA gene	Chr3:33892687-33894050 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005869	lincRNA gene	Chr3:34627564-34628910 (+)
WSB/EiJ	MGP_WSBEiJ_G0006062	lincRNA gene	Chr3:35284211-35285577 (+)

Homology

• Gene Tree
  4930594O21Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 4930594O21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000085677 (Evidence)
• NCBI Gene
  75947

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085677	Ensembl Gene Model | MGI Sequence Detail	1364	C57BL/6J
transcript	ENSMUST00000144981	Ensembl | MGI Sequence Detail	682	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4930594O21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28907	Chr3:37668060-37668076 (+)	6 bp