Tmem150cos Gene Detail

Summary

• Symbol
  Tmem150cos
• Name
  transmembrane protein 150C, opposite strand
• Synonyms
  5830403M04Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1923253
  NCBI Gene: 76003
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:100225821-100243132 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  611 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923253	antisense lncRNA gene	Chr5:100225821-100243132 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004122	antisense lncRNA gene	Chr5:101531587-101550197 (+)
A/J	MGP_AJ_G0004103	antisense lncRNA gene	Chr5:97753995-97774326 (+)
AKR/J	MGP_AKRJ_G0004082	antisense lncRNA gene	Chr5:100995180-101013851 (+)
BALB/cJ	MGP_BALBcJ_G0004089	antisense lncRNA gene	Chr5:98784747-98802700 (+)
C3H/HeJ	MGP_C3HHeJ_G0004036	antisense lncRNA gene	Chr5:101325221-101344179 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004237	antisense lncRNA gene	Chr5:105784450-105801923 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003713	antisense lncRNA gene	Chr5:93016271-93033542 (+)
CAST/EiJ	MGP_CASTEiJ_G0003999	antisense lncRNA gene	Chr5:99970367-99989626 (+)
CBA/J	MGP_CBAJ_G0004030	antisense lncRNA gene	Chr5:109420674-109441089 (+)
DBA/2J	MGP_DBA2J_G0004045	antisense lncRNA gene	Chr5:97947945-97965505 (+)
FVB/NJ	MGP_FVBNJ_G0004063	antisense lncRNA gene	Chr5:96759745-96777354 (+)
LP/J	MGP_LPJ_G0004124	antisense lncRNA gene	Chr5:102141978-102160465 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004052	antisense lncRNA gene	Chr5:114506178-114523623 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004233	antisense lncRNA gene	Chr5:100465684-100485291 (+)
PWK/PhJ	MGP_PWKPhJ_G0003952	antisense lncRNA gene	Chr5:96382759-96400886 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003896	antisense lncRNA gene	Chr5:98135563-98154827 (+)
WSB/EiJ	MGP_WSBEiJ_G0004034	antisense lncRNA gene	Chr5:100782313-100801426 (+)

Homology

• Gene Tree
  Tmem150cos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Tmem150cos
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000086259 (Evidence)
• NCBI Gene
  76003

Representative Sequences			Length	Strain/Species
genomic	76003	NCBI Gene Model | MGI Sequence Detail	17312	C57BL/6J
transcript	NR_045993	RefSeq | MGI Sequence Detail	1340	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Tmem150cos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47476	Chr5:100225749-100225781 (+)	-56 bp