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Zc3h18 Gene Detail
Summary
  • Symbol
    Zc3h18
  • Name
    zinc finger CCCH-type containing 18
  • Synonyms
    1190001B23Rik, 5830416A07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923264
    NCBI Gene: 76014
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:123103348-123144099 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 70.98 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    874 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923264
 protein coding gene Chr8:123103298-123144104 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034222
 protein coding gene Chr8:125908358-125954554 (+)
A/J MGP_AJ_G0034202
 protein coding gene Chr8:120698715-120740883 (+)
AKR/J MGP_AKRJ_G0034129
 protein coding gene Chr8:124218230-124259421 (+)
BALB/cJ MGP_BALBcJ_G0034196
 protein coding gene Chr8:120901767-120942810 (+)
C3H/HeJ MGP_C3HHeJ_G0033907
 protein coding gene Chr8:124917957-124958661 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034716
 protein coding gene Chr8:130098437-130139181 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031658
 protein coding gene Chr8:113526684-113577056 (+)
CAST/EiJ MGP_CASTEiJ_G0033234
 protein coding gene Chr8:124992386-125037638 (+)
CBA/J MGP_CBAJ_G0033880
 protein coding gene Chr8:134903003-134944334 (+)
DBA/2J MGP_DBA2J_G0034036
 protein coding gene Chr8:119892777-119933230 (+)
FVB/NJ MGP_FVBNJ_G0033979
 protein coding gene Chr8:119019865-119067817 (+)
LP/J MGP_LPJ_G0034125
 protein coding gene Chr8:126040907-126081648 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034026
 protein coding gene Chr8:137080781-137121904 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034734
 protein coding gene Chr8:124402156-124442866 (+)
PWK/PhJ MGP_PWKPhJ_G0032936
 protein coding gene Chr8:119710504-119752393 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032776
 protein coding gene Chr8:123125841-123168200 (+)
WSB/EiJ MGP_WSBEiJ_G0033350
 protein coding gene Chr8:125153686-125197579 (+)



Homology
more
  • Human Ortholog
    ZC3H18, zinc finger CCCH-type containing 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZC3H18, zinc finger CCCH-type containing 18
  • Synonyms
    NHN1
  • Links
    NCBI Gene ID: 124245
    neXtProt AC: NX_Q86VM9
    UniProt: Q86VM9

  • Chr Location
    16q24.2; chr16:88570403-88631964 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    931
  • Tissues
    27
  • cDNA Data
    116
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000017478 Ensembl Gene Model | MGI Sequence Detail 40752 C57BL/6J ±  kb
transcript ENSMUST00000017622 Ensembl | MGI Sequence Detail 3810 Not Applicable  
polypeptide ENSMUSP00000017622 Ensembl | MGI Sequence Detail 972 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000029886 zinc finger CCCH domain-containing protein 18
    (term hierarchy)
  • InterPro Domains
    IPR041367 E3 ligase, CCCH-type zinc finger
    IPR000571 Zinc finger, CCCH-type
    IPR052647 Zinc finger CCCH-type domain-containing protein
    IPR036855 Zinc finger, CCCH-type superfamily
  • GlyGen
    Q0P678 5 sites, 2 N-linked glycans (3 sites), 1 O-linked glycan (2 sites)
Molecular
Reagents
less
  • All nucleic 116
    cDNA 116

    Microarray probesets 1
Other
Accession IDs
less
MGI:1916183
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory