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5830405F06Rik Gene Detail
Summary
  • Symbol
    5830405F06Rik
  • Name
    RIKEN cDNA 5830405F06 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923265
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:41032817-41040036 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    423 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923265
 lncRNA gene Chr6:41032817-41040036 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006944
 lincRNA gene Chr6:39530241-39537464 (+)
A/J MGP_AJ_G0006938
 lincRNA gene Chr6:37809613-37816836 (+)
AKR/J MGP_AKRJ_G0006908
 lincRNA gene Chr6:39011047-39018270 (+)
BALB/cJ MGP_BALBcJ_G0006914
 lincRNA gene Chr6:38022005-38029228 (+)
C3H/HeJ MGP_C3HHeJ_G0006859
 lincRNA gene Chr6:39033329-39040552 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007079
 lincRNA gene Chr6:40522577-40529796 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006325
 lincRNA gene Chr6:35593917-35603221 (+)
CAST/EiJ MGP_CASTEiJ_G0006776
 lincRNA gene Chr6:38924547-38932999 (+)
CBA/J MGP_CBAJ_G0006841
 lincRNA gene Chr6:42151275-42158486 (+)
DBA/2J MGP_DBA2J_G0006861
 lincRNA gene Chr6:37619514-37626717 (+)
FVB/NJ MGP_FVBNJ_G0006884
 lincRNA gene Chr6:37394675-37403091 (+)
LP/J MGP_LPJ_G0006944
 lincRNA gene Chr6:39542062-39549285 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006864
 lincRNA gene Chr6:44397662-44404881 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007081
 lincRNA gene Chr6:38975080-38982299 (+)
PWK/PhJ MGP_PWKPhJ_G0006718
 lincRNA gene Chr6:37243325-37251796 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006626
 lincRNA gene Chr6:38682645-38691332 (+)
WSB/EiJ MGP_WSBEiJ_G0006831
 lincRNA gene Chr6:38916782-38925252 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103586 Ensembl Gene Model | MGI Sequence Detail 7220 C57BL/6J ±  kb
transcript ENSMUST00000192753 Ensembl | MGI Sequence Detail 1755 Not Applicable  
polypeptide Q9D3G4 UniProt | EBI | MGI Sequence Detail 127 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR050413 T cell receptor beta variable
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory