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6530402F18Rik Gene Detail
Summary
  • Symbol
    6530402F18Rik
  • Name
    RIKEN cDNA 6530402F18 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923470
    NCBI Gene: 76220
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:29135128-29143005 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 19.66 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    173 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923470
 lncRNA gene Chr2:29135119-29143018 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015407
 unclassified non-coding RNA gene Chr2:27369309-27377204 (-)
A/J MGP_AJ_G0015382
 unclassified non-coding RNA gene Chr2:26322166-26330065 (-)
AKR/J MGP_AKRJ_G0015346
 unclassified non-coding RNA gene Chr2:27195040-27202939 (-)
BALB/cJ MGP_BALBcJ_G0015346
 unclassified non-coding RNA gene Chr2:26445515-26453415 (-)
C3H/HeJ MGP_C3HHeJ_G0015170
 unclassified non-coding RNA gene Chr2:27117564-27125463 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015800
 unclassified non-coding RNA gene Chr2:28268874-28276773 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013541
 unclassified non-coding RNA gene Chr2:25120767-25128673 (-)
CAST/EiJ MGP_CASTEiJ_G0014721
 unclassified non-coding RNA gene Chr2:27017173-27025060 (-)
CBA/J MGP_CBAJ_G0015149
 unclassified non-coding RNA gene Chr2:29240054-29247953 (-)
DBA/2J MGP_DBA2J_G0015244
 unclassified non-coding RNA gene Chr2:26110882-26118781 (-)
FVB/NJ MGP_FVBNJ_G0015251
 unclassified non-coding RNA gene Chr2:25915727-25923625 (-)
LP/J MGP_LPJ_G0015324
 unclassified non-coding RNA gene Chr2:27311574-27319468 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015277
 unclassified non-coding RNA gene Chr2:29212128-29220027 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015839
 unclassified non-coding RNA gene Chr2:27107058-27114957 (-)
PWK/PhJ MGP_PWKPhJ_G0014510
 unclassified non-coding RNA gene Chr2:25928649-25936535 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014298
 unclassified non-coding RNA gene Chr2:27210402-27218309 (-)
WSB/EiJ MGP_WSBEiJ_G0014828
 unclassified non-coding RNA gene Chr2:27242139-27250034 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 76220 NCBI Gene Model | MGI Sequence Detail 7878 C57BL/6J ±  kb
transcript NR_029460 RefSeq | MGI Sequence Detail 4308 C57BL/6  
polypeptide Q9D362 UniProt | EBI | MGI Sequence Detail 153 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 14
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory