6530409C15Rik Gene Detail

Summary

• Symbol
  6530409C15Rik
• Name
  RIKEN cDNA 6530409C15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923474
  NCBI Gene: 115490342
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:28215498-28234934 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 11.99 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  600 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923474	lncRNA gene	Chr6:28215498-28260861 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004239	antisense lncRNA gene	Chr6:25921220-25973635 (+)
A/J	MGP_AJ_G0004217	antisense lncRNA gene	Chr6:24833306-24878611 (+)
AKR/J	MGP_AKRJ_G0004198	antisense lncRNA gene	Chr6:25652285-25697584 (+)
BALB/cJ	MGP_BALBcJ_G0004204	antisense lncRNA gene	Chr6:24994361-25039602 (+)
C3H/HeJ	MGP_C3HHeJ_G0004152	antisense lncRNA gene	Chr6:25638516-25683574 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004353	antisense lncRNA gene	Chr6:26728276-26775135 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003826	antisense lncRNA gene	Chr6:23051756-23099888 (+)
CAST/EiJ	MGP_CASTEiJ_G0004114	antisense lncRNA gene	Chr6:25444816-25493100 (+)
CBA/J	MGP_CBAJ_G0004146	antisense lncRNA gene	Chr6:27689443-27737792 (+)
DBA/2J	MGP_DBA2J_G0004162	antisense lncRNA gene	Chr6:24787844-24837543 (+)
FVB/NJ	MGP_FVBNJ_G0004178	antisense lncRNA gene	Chr6:24544874-24590353 (+)
LP/J	MGP_LPJ_G0004240	antisense lncRNA gene	Chr6:26068272-26117760 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004168	antisense lncRNA gene	Chr6:30232055-30295687 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004350	antisense lncRNA gene	Chr6:25536301-25581538 (+)
PWK/PhJ	MGP_PWKPhJ_G0004067	antisense lncRNA gene	Chr6:24313946-24360099 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004011	antisense lncRNA gene	Chr6:25238503-25286401 (+)
WSB/EiJ	MGP_WSBEiJ_G0004150	antisense lncRNA gene	Chr6:25496213-25545991 (+)

Homology

• Gene Tree
  6530409C15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000043340 (Evidence)
• NCBI Gene
  115490342

Representative Sequences			Length	Strain/Species
genomic	115490342	NCBI Gene Model | MGI Sequence Detail	19437	C57BL/6J
transcript	NR_165173	RefSeq | MGI Sequence Detail	2303	C57BL/6
polypeptide	Q9D357	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42