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Smkr-ps Pseudogene Detail
Summary
  • Symbol
    Smkr-ps
  • Name
    small lysine rich protein 1, pseudogene
  • Synonyms
    1700023L04Rik
Location &
Maps
more
  • Sequence Map
    Chr6:29985328-29993530 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 12.39 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    302 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923669
 pseudogene Chr6:29985234-29993777 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006915
 lincRNA gene Chr6:27825697-27833654 (+)
A/J MGP_AJ_G0006909
 lincRNA gene Chr6:26641199-26649436 (+)
AKR/J MGP_AKRJ_G0006879
 lincRNA gene Chr6:27514351-27522304 (+)
BALB/cJ MGP_BALBcJ_G0006885
 lincRNA gene Chr6:26799234-26807238 (+)
C3H/HeJ MGP_C3HHeJ_G0006830
 lincRNA gene Chr6:27523552-27534511 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007050
 lincRNA gene Chr6:28610012-28633696 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006297
 lincRNA gene Chr6:24842932-24850865 (+)
CAST/EiJ MGP_CASTEiJ_G0006747
 lincRNA gene Chr6:27325202-27336934 (+)
CBA/J MGP_CBAJ_G0006812
 lincRNA gene Chr6:29694346-29705731 (+)
DBA/2J MGP_DBA2J_G0006832
 lincRNA gene Chr6:26578750-26586847 (+)
FVB/NJ MGP_FVBNJ_G0006855
 lincRNA gene Chr6:26334353-26343199 (+)
LP/J MGP_LPJ_G0006915
 lincRNA gene Chr6:27960532-27969324 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006836
 lincRNA gene Chr6:32176416-32185332 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007052
 lincRNA gene Chr6:27403463-27411594 (+)
PWK/PhJ MGP_PWKPhJ_G0006689
 lincRNA gene Chr6:26134815-26143103 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006598
 lincRNA gene Chr6:27128206-27135831 (+)
WSB/EiJ MGP_WSBEiJ_G0006802
 lincRNA gene Chr6:27364280-27372498 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    15
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76419 NCBI Gene Model | MGI Sequence Detail 8203 C57BL/6J ±  kb
transcript NR_040263 RefSeq | MGI Sequence Detail 662 C57BL/6  
polypeptide Q8CF37 UniProt | EBI | MGI Sequence Detail 103 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR037760 Small lysine-rich protein 1
Molecular
Reagents
less
  • All nucleic 17
    Genomic 2
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory