1700047A11Rik MGI Mouse Gene Detail - MGI:1923854

Sequence Map

Chr8:26572637-26586548 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923854	lncRNA gene	Chr8:26572637-26586550 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004548	antisense lncRNA gene	Chr8:24176418-24196133 (+)
A/J	MGP_AJ_G0004528	antisense lncRNA gene	Chr8:23289874-23309606 (+)
AKR/J	MGP_AKRJ_G0004512	antisense lncRNA gene	Chr8:24058980-24078691 (+)
BALB/cJ	MGP_BALBcJ_G0004513	antisense lncRNA gene	Chr8:23439336-23459040 (+)
C3H/HeJ	MGP_C3HHeJ_G0004462	antisense lncRNA gene	Chr8:24268187-24287895 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004663	antisense lncRNA gene	Chr8:25154653-25177438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004115	antisense lncRNA gene	Chr8:20563226-20579485 (+)
CAST/EiJ	MGP_CASTEiJ_G0004422	antisense lncRNA gene	Chr8:23719727-23742614 (+)
CBA/J	MGP_CBAJ_G0004456	antisense lncRNA gene	Chr8:26135705-26156967 (+)
DBA/2J	MGP_DBA2J_G0004472	antisense lncRNA gene	Chr8:23256152-23275889 (+)
FVB/NJ	MGP_FVBNJ_G0004488	antisense lncRNA gene	Chr8:23067390-23087099 (+)
LP/J	MGP_LPJ_G0004552	antisense lncRNA gene	Chr8:24154817-24175988 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004477	antisense lncRNA gene	Chr8:25583746-25604083 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004662	antisense lncRNA gene	Chr8:23986871-24008019 (+)
PWK/PhJ	MGP_PWKPhJ_G0004374	antisense lncRNA gene	Chr8:22898165-22920537 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004316	antisense lncRNA gene	Chr8:23378277-23405718 (+)
WSB/EiJ	MGP_WSBEiJ_G0004461	antisense lncRNA gene	Chr8:24216334-24237729 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	76604	NCBI Gene Model \| MGI Sequence Detail	13912	C57BL/6J	± kb
	transcript	NR_110583	RefSeq \| MGI Sequence Detail	620	C57BL/6

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MGI:1925458

Summaries

All 12

Phenotypes 3
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700047A11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76734	Chr8:26572631-26572653 (+)	5 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/05/2024 MGI 6.24