1700099I09Rik Gene Detail

Summary

• Symbol
  1700099I09Rik
• Name
  RIKEN cDNA 1700099I09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1923874
  NCBI Gene: 76624
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:102896763-102898404 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 54.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923874	lncRNA gene	Chr13:102896763-102898404 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003211	antisense lncRNA gene	Chr13:104817450-104819096 (+)
A/J	MGP_AJ_G0003187	antisense lncRNA gene	Chr13:100728279-100729924 (+)
AKR/J	MGP_AKRJ_G0003169	antisense lncRNA gene	Chr13:103792350-103793995 (+)
BALB/cJ	MGP_BALBcJ_G0003174	antisense lncRNA gene	Chr13:101439268-101440913 (+)
C3H/HeJ	MGP_C3HHeJ_G0003130	antisense lncRNA gene	Chr13:103529682-103531336 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003317	antisense lncRNA gene	Chr13:107957255-107958909 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002844	antisense lncRNA gene	Chr13:96390533-96392156 (+)
CAST/EiJ	MGP_CASTEiJ_G0003096	antisense lncRNA gene	Chr13:102988787-102990417 (+)
CBA/J	MGP_CBAJ_G0003127	antisense lncRNA gene	Chr13:112193326-112194982 (+)
DBA/2J	MGP_DBA2J_G0003132	antisense lncRNA gene	Chr13:100492853-100494497 (+)
FVB/NJ	MGP_FVBNJ_G0003150	antisense lncRNA gene	Chr13:99186746-99188387 (+)
LP/J	MGP_LPJ_G0003208	antisense lncRNA gene	Chr13:104836436-104838081 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003141	antisense lncRNA gene	Chr13:112383634-112385293 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003318	antisense lncRNA gene	Chr13:103264650-103266290 (+)
PWK/PhJ	MGP_PWKPhJ_G0003054	antisense lncRNA gene	Chr13:99231862-99233486 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003000	antisense lncRNA gene	Chr13:99484547-99486177 (+)
WSB/EiJ	MGP_WSBEiJ_G0003130	antisense lncRNA gene	Chr13:103729980-103731628 (+)

Homology

• Gene Tree
  1700099I09Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000091906 (Evidence)
• NCBI Gene
  76624

Representative Sequences			Length	Strain/Species
genomic	76624	NCBI Gene Model | MGI Sequence Detail	1642	C57BL/6J
transcript	NR_130171	RefSeq | MGI Sequence Detail	818	Not Specified

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700099I09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120896	Chr13:102896748-102896780 (+)	1 bp