1700123M08Rik MGI Mouse Gene Detail - MGI:1923915

Symbol

1700123M08Rik
Name

RIKEN cDNA 1700123M08 gene
Synonyms

1600025K15Rik

Feature Type

lncRNA gene
IDs

MGI:1923915
NCBI Gene: 100503636
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr4:11966574-11994295 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 5.48 cM
Mapping Data

1 experiment

SNPs within 2kb

792 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923915	lncRNA gene	Chr4:11966565-11994653 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015533	unclassified non-coding RNA gene	Chr4:8662464-8690141 (+)
A/J	MGP_AJ_G0015510	unclassified non-coding RNA gene	Chr4:8517418-8545043 (+)
AKR/J	MGP_AKRJ_G0015474	unclassified non-coding RNA gene	Chr4:8611058-8638866 (+)
BALB/cJ	MGP_BALBcJ_G0015472	unclassified non-coding RNA gene	Chr4:8436625-8464297 (+)
C3H/HeJ	MGP_C3HHeJ_G0015295	unclassified non-coding RNA gene	Chr4:8785126-8812767 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015926	unclassified non-coding RNA gene	Chr4:9067895-9095577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013661	unclassified non-coding RNA gene	Chr4:8029292-8058056 (+)
CAST/EiJ	MGP_CASTEiJ_G0014849	unclassified non-coding RNA gene	Chr4:8612884-8640565 (+)
CBA/J	MGP_CBAJ_G0015276	unclassified non-coding RNA gene	Chr4:9331949-9359594 (+)
DBA/2J	MGP_DBA2J_G0015370	unclassified non-coding RNA gene	Chr4:8380809-8409017 (+)
FVB/NJ	MGP_FVBNJ_G0015377	unclassified non-coding RNA gene	Chr4:8203045-8230657 (+)
LP/J	MGP_LPJ_G0015449	unclassified non-coding RNA gene	Chr4:8751432-8779097 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015401	unclassified non-coding RNA gene	Chr4:9509757-9537486 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015967	unclassified non-coding RNA gene	Chr4:8612883-8640507 (+)
PWK/PhJ	MGP_PWKPhJ_G0014635	unclassified non-coding RNA gene	Chr4:8404485-8432491 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014423	unclassified non-coding RNA gene	Chr4:8533922-8562879 (+)
WSB/EiJ	MGP_WSBEiJ_G0014955	unclassified non-coding RNA gene	Chr4:8678238-8705855 (+)

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Gene Tree

1700123M08Rik

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References

1 with disease annotations

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Phenotype Summary

7 phenotype references

All Mutations and Alleles

8
Gene trapped

4
Spontaneous

1
Transgenic

3
Genomic Mutations

1 involving 1700123M08Rik
Find Mice (IMSR)

5 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

9

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

37
RefSeq

1

Ensembl

ENSMUSG00000085614 (Evidence)
NCBI Gene

100503636

Representative Sequences				Length	Strain/Species	Flank
	genomic	100503636	NCBI Gene Model \| MGI Sequence Detail	27722	C57BL/6J	± kb
	transcript	NR_040577	RefSeq \| MGI Sequence Detail	1066	C57BL/6

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All nucleic 9

cDNA 9

Microarray probesets 1

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MGI:1919278

Summaries

All 20

Diseases 1

Gene Ontology 1

Phenotypes 7
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:282558 Collin GB, et al., Mouse Models of Inherited Retinal Degeneration with Photoreceptor Cell Loss. Cells. 2020 Apr 10;9(4):931

TSS for 1700123M08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36499	Chr4:11965895-11965909 (+)	-672 bp
Tssr36500	Chr4:11966627-11966674 (+)	77 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24