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5330417H12Rik Gene Detail
Summary
  • Symbol
    5330417H12Rik
  • Name
    RIKEN cDNA 5330417H12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1923929
    NCBI Gene: 76679
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:107223178-107224368 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 57.21 cM, cytoband F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    159 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923929
 lncRNA gene Chr7:107223178-107224368 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032798
 protein coding gene Chr7:110962697-110963864 (-)
A/J MGP_AJ_G0032779
 protein coding gene Chr7:108200292-108201482 (-)
AKR/J MGP_AKRJ_G0032711
 protein coding gene Chr7:110925217-110926407 (-)
BALB/cJ MGP_BALBcJ_G0032785
 protein coding gene Chr7:107907617-107908807 (-)
C3H/HeJ MGP_C3HHeJ_G0032494
 protein coding gene Chr7:110949569-110950736 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033290
 protein coding gene Chr7:115549222-115550412 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030268
 protein coding gene Chr7:109863029-109864230 (-)
CAST/EiJ MGP_CASTEiJ_G0031825
 protein coding gene Chr7:102556681-102557871 (-)
CBA/J MGP_CBAJ_G0032469
 protein coding gene Chr7:119357173-119358340 (-)
DBA/2J MGP_DBA2J_G0032620
 protein coding gene Chr7:106339693-106340860 (-)
FVB/NJ MGP_FVBNJ_G0032572
 protein coding gene Chr7:106192952-106194142 (-)
LP/J MGP_LPJ_G0032712
 protein coding gene Chr7:112556552-112557719 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032606
 protein coding gene Chr7:120962730-120963920 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033309
 protein coding gene Chr7:109989522-109990689 (-)
PWK/PhJ MGP_PWKPhJ_G0031531
 protein coding gene Chr7:99214100-99215290 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031381
 protein coding gene Chr7:96582949-96584150 (-)
WSB/EiJ MGP_WSBEiJ_G0031940
 protein coding gene Chr7:110742480-110743670 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    21
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049740 Ensembl Gene Model | MGI Sequence Detail 1191 C57BL/6J ±  kb
transcript AK017242 GenBank | ENA | DDBJ | MGI Sequence Detail 1192 C57BL/6J  
polypeptide Q9D3P2 UniProt | EBI | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory