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Slc6a21 Gene Detail
Summary
  • Symbol
    Slc6a21
  • Name
    solute carrier family 6 member 21
  • Synonyms
    1700039E15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923963
    NCBI Gene: 76713
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:44926937-44938422 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 29.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    392 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923963
 protein coding gene Chr7:44926755-44938422 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032212
 protein coding gene Chr7:45522503-45533988 (+)
A/J MGP_AJ_G0032191
 protein coding gene Chr7:44651546-44663031 (+)
AKR/J MGP_AKRJ_G0032127
 protein coding gene Chr7:45887677-45899162 (+)
BALB/cJ MGP_BALBcJ_G0032203
 protein coding gene Chr7:44651785-44663270 (+)
C3H/HeJ MGP_C3HHeJ_G0031919
 protein coding gene Chr7:46378564-46390049 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032695
 protein coding gene Chr7:47787894-47799379 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029709
 protein coding gene Chr7:47215039-47227123 (+)
CAST/EiJ MGP_CASTEiJ_G0031247
 protein coding gene Chr7:37780152-37791641 (+)
CBA/J MGP_CBAJ_G0031883
 protein coding gene Chr7:49364376-49375861 (+)
DBA/2J MGP_DBA2J_G0032041
 protein coding gene Chr7:44326260-44337745 (+)
FVB/NJ MGP_FVBNJ_G0031992
 protein coding gene Chr7:44102796-44114714 (+)
LP/J MGP_LPJ_G0032119
 protein coding gene Chr7:46223640-46235109 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032029
 protein coding gene Chr7:48073142-48084627 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032711
 protein coding gene Chr7:45104461-45115945 (+)
PWK/PhJ MGP_PWKPhJ_G0030970
 protein coding gene Chr7:37695263-37706815 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030807
 protein coding gene Chr7:33120187-33131730 (+)
WSB/EiJ MGP_WSBEiJ_G0031364
 protein coding gene Chr7:45598453-45609943 (+)



Homology
more
  • Human Ortholog
    SLC6A21P, solute carrier family 6 member 21, pseudogene
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC6A21P, solute carrier family 6 member 21, pseudogene
  • Synonyms
    SLC6A21
  • Links
    NCBI Gene ID: 652969

  • Chr Location
    19q13.33; chr19:49252333-49256340 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000070568 Ensembl Gene Model | MGI Sequence Detail 11486 C57BL/6J ±  kb
transcript ENSMUST00000210861 Ensembl | MGI Sequence Detail 2838 Not Applicable  
polypeptide ENSMUSP00000147890 Ensembl | MGI Sequence Detail 748 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR000175 Sodium:neurotransmitter symporter
    IPR037272 Sodium:neurotransmitter symporter superfamily
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
References
more
  • Summaries
    All 15
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory