C920021L13Rik Gene Detail

Summary

• Symbol
  C920021L13Rik
• Name
  RIKEN cDNA C920021L13 gene
• Synonyms
  100042889

• Feature Type
  lncRNA gene
• IDs
  MGI:1923991
  NCBI Gene: 100042889
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:95778834-95796405 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.39 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  394 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923991	lncRNA gene	Chr3:95778820-95796405 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003790	antisense lncRNA gene	Chr3:96652585-96672142 (+)
A/J	MGP_AJ_G0003770	antisense lncRNA gene	Chr3:93625291-93642498 (+)
AKR/J	MGP_AKRJ_G0003747	antisense lncRNA gene	Chr3:95808353-95825549 (+)
BALB/cJ	MGP_BALBcJ_G0003759	antisense lncRNA gene	Chr3:93405340-93423304 (+)
C3H/HeJ	MGP_C3HHeJ_G0003705	antisense lncRNA gene	Chr3:96108316-96126660 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003900	antisense lncRNA gene	Chr3:100196369-100216669 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003404	antisense lncRNA gene	Chr3:89951862-89970364 (+)
CAST/EiJ	MGP_CASTEiJ_G0003669	antisense lncRNA gene	Chr3:95385055-95403736 (+)
CBA/J	MGP_CBAJ_G0003701	antisense lncRNA gene	Chr3:103864171-103883896 (+)
DBA/2J	MGP_DBA2J_G0003711	antisense lncRNA gene	Chr3:92914333-92933905 (+)
FVB/NJ	MGP_FVBNJ_G0003732	antisense lncRNA gene	Chr3:90994414-91011825 (+)
LP/J	MGP_LPJ_G0003791	antisense lncRNA gene	Chr3:97964417-97984878 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003719	antisense lncRNA gene	Chr3:109994190-110012435 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003900	antisense lncRNA gene	Chr3:95455062-95474013 (+)
PWK/PhJ	MGP_PWKPhJ_G0003625	antisense lncRNA gene	Chr3:92812556-92831431 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003568	antisense lncRNA gene	Chr3:93744714-93766383 (+)
WSB/EiJ	MGP_WSBEiJ_G0003705	antisense lncRNA gene	Chr3:95845975-95865081 (+)

Homology

• Gene Tree
  C920021L13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  2 involving C920021L13Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  5
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000080727 (Evidence)
• NCBI Gene
  100042889

Representative Sequences			Length	Strain/Species
genomic	100042889	NCBI Gene Model | MGI Sequence Detail	17572	C57BL/6J
transcript	NR_040446	RefSeq | MGI Sequence Detail	1726	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 5

  Primer pair 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3782266

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for C920021L13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30647	Chr3:95778831-95778892 (+)	28 bp
Tssr30648	Chr3:95778897-95778947 (+)	88 bp
Tssr30649	Chr3:95784365-95784371 (+)	5,534 bp
Tssr30650	Chr3:95789882-95789887 (+)	11,051 bp
Tssr30651	Chr3:95790039-95790052 (+)	11,212 bp
Tssr30652	Chr3:95790065-95790089 (+)	11,243 bp