2410124H12Rik Gene Detail

Summary

• Symbol
  2410124H12Rik
• Name
  RIKEN cDNA 2410124H12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924035
  NCBI Gene: 76785
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:92275630-92294258 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 53.64 cM, cytoband C4
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  747 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924035	lncRNA gene	Chr16:92267791-92294268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037108	sense overlapping lncRNA gene	Chr16:93564215-93583300 (+)
A/J	MGP_AJ_G0037095	sense overlapping lncRNA gene	Chr16:89183686-89203154 (+)
AKR/J	MGP_AKRJ_G0037043	sense overlapping lncRNA gene	Chr16:91906704-91930854 (+)
BALB/cJ	MGP_BALBcJ_G0037086	sense overlapping lncRNA gene	Chr16:89712965-89731971 (+)
C3H/HeJ	MGP_C3HHeJ_G0036773	sense overlapping lncRNA gene	Chr16:92444126-92463673 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037600	sense overlapping lncRNA gene	Chr16:96557423-96577179 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034643	sense overlapping lncRNA gene	Chr16:86865581-86885906 (+)
CAST/EiJ	MGP_CASTEiJ_G0035960	sense overlapping lncRNA gene	Chr16:93034706-93057573 (+)
CBA/J	MGP_CBAJ_G0036748	sense overlapping lncRNA gene	Chr16:100701288-100722299 (+)
DBA/2J	MGP_DBA2J_G0036923	sense overlapping lncRNA gene	Chr16:89091123-89110418 (+)
FVB/NJ	MGP_FVBNJ_G0036873	sense overlapping lncRNA gene	Chr16:88215194-88234665 (+)
LP/J	MGP_LPJ_G0036970	sense overlapping lncRNA gene	Chr16:93259304-93279085 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036881	sense overlapping lncRNA gene	Chr16:105200335-105221134 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037717	sense overlapping lncRNA gene	Chr16:92407489-92426059 (+)
PWK/PhJ	MGP_PWKPhJ_G0035654	sense overlapping lncRNA gene	Chr16:89288028-89308880 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035461	sense overlapping lncRNA gene	Chr16:91979080-92000650 (+)
WSB/EiJ	MGP_WSBEiJ_G0036162	sense overlapping lncRNA gene	Chr16:92652633-92673544 (+)

Homology

• Gene Tree
  2410124H12Rik
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  68 phenotype references
  

• All Mutations and Alleles
  8
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving 2410124H12Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS57040.1

• Ensembl
  ENSMUSG00000051297 (Evidence)
• NCBI Gene
  76785

Representative Sequences			Length	Strain/Species
genomic	76785	NCBI Gene Model | MGI Sequence Detail	18629	C57BL/6J
transcript	NR_165041	RefSeq | MGI Sequence Detail	710	C57BL/6
polypeptide	Q9CWF8	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 80

  Diseases 4

  Phenotypes 68
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for 2410124H12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139476	Chr16:92282593-92282624 (+)	6,979 bp