Srrm4os Gene Detail

Summary

• Symbol
  Srrm4os
• Name
  serine/arginine repetitive matrix 4, opposite strand
• Synonyms
  2410137F16Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1924048
  NCBI Gene: 76798
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:116576781-116603546 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  796 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924048	antisense lncRNA gene	Chr5:116576771-116603546 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004156	antisense lncRNA gene	Chr5:119437635-119471207 (+)
A/J	MGP_AJ_G0004135	antisense lncRNA gene	Chr5:114624227-114652113 (+)
AKR/J	MGP_AKRJ_G0004116	antisense lncRNA gene	Chr5:118311829-118340167 (+)
BALB/cJ	MGP_BALBcJ_G0004121	antisense lncRNA gene	Chr5:116034578-116063425 (+)
C3H/HeJ	MGP_C3HHeJ_G0004070	antisense lncRNA gene	Chr5:118827191-118857870 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004270	antisense lncRNA gene	Chr5:123991654-124030079 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003746	antisense lncRNA gene	Chr5:109399569-109427060 (+)
CAST/EiJ	MGP_CASTEiJ_G0004031	antisense lncRNA gene	Chr5:117805725-117838616 (+)
CBA/J	MGP_CBAJ_G0004064	antisense lncRNA gene	Chr5:128767688-128798698 (+)
DBA/2J	MGP_DBA2J_G0004079	antisense lncRNA gene	Chr5:114721346-114751699 (+)
FVB/NJ	MGP_FVBNJ_G0004095	antisense lncRNA gene	Chr5:113554017-113580633 (+)
LP/J	MGP_LPJ_G0004157	antisense lncRNA gene	Chr5:119955388-119984201 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004085	antisense lncRNA gene	Chr5:133053319-133085931 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004267	antisense lncRNA gene	Chr5:117817968-117845742 (+)
PWK/PhJ	MGP_PWKPhJ_G0003985	antisense lncRNA gene	Chr5:113384502-113411535 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003928	antisense lncRNA gene	Chr5:115354903-115385718 (+)
WSB/EiJ	MGP_WSBEiJ_G0004068	antisense lncRNA gene	Chr5:118408541-118438139 (+)

Homology

• Gene Tree
  Srrm4os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Gene trapped
  13
• Radiation induced
  1
• Genomic Mutations
  2 involving Srrm4os
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086219 (Evidence)
• NCBI Gene
  76798

Representative Sequences			Length	Strain/Species
genomic	76798	NCBI Gene Model | MGI Sequence Detail	26766	C57BL/6J
transcript	NR_015595	RefSeq | MGI Sequence Detail	3358	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Srrm4os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48345	Chr5:116576771-116576782 (+)	-4 bp