2900052L18Rik Gene Detail

Summary

• Symbol
  2900052L18Rik
• Name
  RIKEN cDNA 2900052L18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924085
  NCBI Gene: 102640779
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:120117214-120122464 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 83.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924085	lncRNA gene	Chr11:120116355-120122464 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015226	unclassified non-coding RNA gene	Chr11:124678856-124680639 (-)
A/J	MGP_AJ_G0015200	unclassified non-coding RNA gene	Chr11:119134815-119136598 (-)
AKR/J	MGP_AKRJ_G0015163	unclassified non-coding RNA gene	Chr11:122715245-122717028 (-)
BALB/cJ	MGP_BALBcJ_G0015162	unclassified non-coding RNA gene	Chr11:119491722-119493505 (-)
C3H/HeJ	MGP_C3HHeJ_G0014986	unclassified non-coding RNA gene	Chr11:123050141-123051924 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015619	unclassified non-coding RNA gene	Chr11:128455336-128457119 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013361	unclassified non-coding RNA gene	Chr11:116139484-116141268 (-)
CAST/EiJ	MGP_CASTEiJ_G0014539	unclassified non-coding RNA gene	Chr11:124526380-124528163 (-)
CBA/J	MGP_CBAJ_G0014965	unclassified non-coding RNA gene	Chr11:133477401-133479184 (-)
DBA/2J	MGP_DBA2J_G0015058	unclassified non-coding RNA gene	Chr11:118505659-118507442 (-)
FVB/NJ	MGP_FVBNJ_G0015069	unclassified non-coding RNA gene	Chr11:118197942-118199725 (-)
LP/J	MGP_LPJ_G0015139	unclassified non-coding RNA gene	Chr11:124982717-124984500 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015096	unclassified non-coding RNA gene	Chr11:132322609-132324392 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015658	unclassified non-coding RNA gene	Chr11:123402536-123404319 (-)
PWK/PhJ	MGP_PWKPhJ_G0014331	unclassified non-coding RNA gene	Chr11:119931162-119932942 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014118	unclassified non-coding RNA gene	Chr11:123169753-123171536 (-)
WSB/EiJ	MGP_WSBEiJ_G0014642	unclassified non-coding RNA gene	Chr11:123399313-123401096 (-)

Homology

• Gene Tree
  2900052L18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000043993 (Evidence)
• NCBI Gene
  102640779

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043993	Ensembl Gene Model | MGI Sequence Detail	5251	C57BL/6J
transcript	ENSMUST00000247571	Ensembl | MGI Sequence Detail	1674	Not Applicable
polypeptide	Q8CEV4	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 2900052L18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112280	Chr11:120122454-120122465 (-)	4 bp
Tssr112279	Chr11:120122404-120122433 (-)	45 bp
Tssr112278	Chr11:120122343-120122367 (-)	109 bp
Tssr112277	Chr11:120122291-120122303 (-)	167 bp