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Ccdc116 Gene Detail
Summary
  • Symbol
    Ccdc116
  • Name
    coiled-coil domain containing 116
  • Synonyms
    4930432J16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924122
    NCBI Gene: 76872
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:16956928-16965093 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 10.62 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    192 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924122
 protein coding gene Chr16:16956928-16965459 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022571
 protein coding gene Chr16:14263880-14272045 (-)
A/J MGP_AJ_G0022532
 protein coding gene Chr16:13553998-13562167 (-)
AKR/J MGP_AKRJ_G0022509
 protein coding gene Chr16:14102880-14111043 (-)
BALB/cJ MGP_BALBcJ_G0022535
 protein coding gene Chr16:13703708-13711873 (-)
C3H/HeJ MGP_C3HHeJ_G0022302
 protein coding gene Chr16:14225840-14234005 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022986
 protein coding gene Chr16:14479610-14487775 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020506
 protein coding gene Chr16:13638739-13646721 (-)
CAST/EiJ MGP_CASTEiJ_G0021830
 protein coding gene Chr16:14138436-14143662 (-)
CBA/J MGP_CBAJ_G0022273
 protein coding gene Chr16:15149308-15157473 (-)
DBA/2J MGP_DBA2J_G0022403
 protein coding gene Chr16:13486710-13494879 (-)
FVB/NJ MGP_FVBNJ_G0022379
 protein coding gene Chr16:13521497-13529667 (-)
LP/J MGP_LPJ_G0022470
 protein coding gene Chr16:14034170-14042335 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022400
 protein coding gene Chr16:14848919-14857088 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022997
 protein coding gene Chr16:14023794-14031963 (-)
PWK/PhJ MGP_PWKPhJ_G0021573
 protein coding gene Chr16:13729354-13737642 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021401
 protein coding gene Chr16:14026220-14032078 (-)
WSB/EiJ MGP_WSBEiJ_G0021877
 protein coding gene Chr16:14030007-14038186 (-)



Homology
more
  • Human Ortholog
    CCDC116, coiled-coil domain containing 116
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC116, coiled-coil domain containing 116
  • Links
    NCBI Gene ID: 164592
    neXtProt AC: NX_Q8IYX3
    UniProt: Q8IYX3

  • Chr Location
    22q11.21; chr22:21632716-21637329 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CCDC116 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    4
  • cDNA Data
    6
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022768 Ensembl Gene Model | MGI Sequence Detail 8166 C57BL/6J ±  kb
transcript ENSMUST00000232540 Ensembl | MGI Sequence Detail 2359 Not Applicable  
polypeptide ENSMUSP00000156301 Ensembl | MGI Sequence Detail 686 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory