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Ssbp4 Gene Detail
Summary
  • Symbol
    Ssbp4
  • Name
    single stranded DNA binding protein 4
  • Synonyms
    1210002E11Rik, Ssdp4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924150
    NCBI Gene: 76900
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:71050135-71061084 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 34.15 cM, cytoband C1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    231 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924150
 protein coding gene Chr8:71050135-71061522 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033714
 protein coding gene Chr8:70873120-70883909 (-)
A/J MGP_AJ_G0033697
 protein coding gene Chr8:67996705-68007608 (-)
AKR/J MGP_AKRJ_G0033622
 protein coding gene Chr8:69929299-69940071 (-)
BALB/cJ MGP_BALBcJ_G0033693
 protein coding gene Chr8:68229494-68240283 (-)
C3H/HeJ MGP_C3HHeJ_G0033403
 protein coding gene Chr8:70579338-70590248 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034210
 protein coding gene Chr8:73553771-73565120 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031154
 protein coding gene Chr8:62813300-62824177 (-)
CAST/EiJ MGP_CASTEiJ_G0032728
 protein coding gene Chr8:70069254-70079996 (-)
CBA/J MGP_CBAJ_G0033381
 protein coding gene Chr8:76189529-76200318 (-)
DBA/2J MGP_DBA2J_G0033535
 protein coding gene Chr8:67712128-67722917 (-)
FVB/NJ MGP_FVBNJ_G0033476
 protein coding gene Chr8:66838924-66849713 (-)
LP/J MGP_LPJ_G0033622
 protein coding gene Chr8:70901494-70912283 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033519
 protein coding gene Chr8:78857367-78868190 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034228
 protein coding gene Chr8:70115413-70126202 (-)
PWK/PhJ MGP_PWKPhJ_G0032436
 protein coding gene Chr8:67012953-67023763 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032272
 protein coding gene Chr8:69082245-69093078 (-)
WSB/EiJ MGP_WSBEiJ_G0032843
 protein coding gene Chr8:70475644-70486414 (-)



Homology
more
  • Human Ortholog
    SSBP4, single stranded DNA binding protein 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SSBP4, single stranded DNA binding protein 4
  • Links
    NCBI Gene ID: 170463
    neXtProt AC: NX_Q9BWG4
    UniProt: Q9BWG4

  • Chr Location
    19p13.11; chr19:18402725-18434562 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    732
  • Tissues
    19
  • cDNA Data
    78
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76900 NCBI Gene Model | MGI Sequence Detail 10950 C57BL/6J ±  kb
transcript NM_001372469 RefSeq | MGI Sequence Detail 1743 C57BL/6  
polypeptide NP_001359397 RefSeq | MGI Sequence Detail 415 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR006594 LIS1 homology motif
    IPR008116 Sequence-specific single-strand DNA-binding protein
Molecular
Reagents
less
  • All nucleic 81
    cDNA 79
    Primer pair 1
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2142816
References
more
  • Summaries
    All 33
    Developmental Gene Expression 6
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65653 Wertz K, et al., Large-scale screen for genes involved in gonad development. Mech Dev. 2000 Nov;98(1-2):51-70
  • Latest
    J:240146 Lee B, et al., Single-stranded DNA binding proteins are required for LIM complexes to induce transcriptionally active chromatin and specify spinal neuronal identities. Development. 2016 May 15;143(10):1721-31
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory