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Rbm17 Gene Detail
Summary
  • Symbol
    Rbm17
  • Name
    RNA binding motif protein 17
  • Synonyms
    2700027J02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924188
    NCBI Gene: 76938
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:11590250-11608061 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 8.85 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    615 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924188
 protein coding gene Chr2:11590248-11608964 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025344
 protein coding gene Chr2:9003073-9022260 (-)
A/J MGP_AJ_G0025321
 protein coding gene Chr2:8619593-8637856 (-)
AKR/J MGP_AKRJ_G0025290
 protein coding gene Chr2:8932352-8950806 (-)
BALB/cJ MGP_BALBcJ_G0025317
 protein coding gene Chr2:8595857-8614847 (-)
C3H/HeJ MGP_C3HHeJ_G0025077
 protein coding gene Chr2:8842038-8861618 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025759
 protein coding gene Chr2:9240250-9260494 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023173
 protein coding gene Chr2:8058534-8077105 (-)
CAST/EiJ MGP_CASTEiJ_G0024540
 protein coding gene Chr2:8872360-8892585 (-)
CBA/J MGP_CBAJ_G0025056
 protein coding gene Chr2:9621127-9641422 (-)
DBA/2J MGP_DBA2J_G0025188
 protein coding gene Chr2:8539606-8557874 (-)
FVB/NJ MGP_FVBNJ_G0025150
 protein coding gene Chr2:8461136-8480860 (-)
LP/J MGP_LPJ_G0025274
 protein coding gene Chr2:8914008-8934963 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025182
 protein coding gene Chr2:9517316-9535377 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025817
 protein coding gene Chr2:8849585-8868376 (-)
PWK/PhJ MGP_PWKPhJ_G0024291
 protein coding gene Chr2:8511236-8530410 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024091
 protein coding gene Chr2:8840973-8859572 (-)
WSB/EiJ MGP_WSBEiJ_G0024610
 protein coding gene Chr2:8917204-8937294 (-)



Homology
more
  • Human Ortholog
    RBM17, RNA binding motif protein 17
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM17, RNA binding motif protein 17
  • Synonyms
    SPF45
  • Links
    NCBI Gene ID: 84991
    neXtProt AC: NX_Q96I25
    UniProt: Q96I25

  • Chr Location
    10p15.1; chr10:6089034-6117457 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    24
  • cDNA Data
    68
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76938 NCBI Gene Model | MGI Sequence Detail 17812 C57BL/6J ±  kb
transcript NM_001418859 RefSeq | MGI Sequence Detail 2812 C57BL/6  
polypeptide Q8JZX4 UniProt | EBI | MGI Sequence Detail 405 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 70
    cDNA 68
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 38
    Developmental Gene Expression 3
    Gene Ontology 8
    Phenotypes 12
  • Earliest
    J:48892 Neubauer G, et al., Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex [see comments]. Nat Genet. 1998 Sep;20(1):46-50
  • Latest
    J:271133 De Maio A, et al., RBM17 Interacts with U2SURP and CHERP to Regulate Expression and Splicing of RNA-Processing Proteins. Cell Rep. 2018 Oct 16;25(3):726-736.e7
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory