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Snhg20 Gene Detail
Summary
  • Symbol
    Snhg20
  • Name
    small nucleolar RNA host gene 20
  • Synonyms
    2810008D09Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924222
    NCBI Gene: 76972
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:116967609-116969781 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 81.70 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    250 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924222
 lncRNA gene Chr11:116966834-116969790 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005323
 lincRNA gene Chr11:121272559-121274724 (+)
A/J MGP_AJ_G0005306
 lincRNA gene Chr11:115915938-115918103 (+)
AKR/J MGP_AKRJ_G0005285
 lincRNA gene Chr11:119452699-119454864 (+)
BALB/cJ MGP_BALBcJ_G0005288
 lincRNA gene Chr11:116296235-116298400 (+)
C3H/HeJ MGP_C3HHeJ_G0005237
 lincRNA gene Chr11:119729678-119731843 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005440
 lincRNA gene Chr11:124992481-124994646 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004830
 lincRNA gene Chr11:112940772-112942948 (+)
CAST/EiJ MGP_CASTEiJ_G0005184
 lincRNA gene Chr11:121150121-121152290 (+)
CBA/J MGP_CBAJ_G0005226
 lincRNA gene Chr11:129885657-129887822 (+)
DBA/2J MGP_DBA2J_G0005244
 lincRNA gene Chr11:115326652-115328817 (+)
FVB/NJ MGP_FVBNJ_G0005269
 lincRNA gene Chr11:114925794-114927959 (+)
LP/J MGP_LPJ_G0005325
 lincRNA gene Chr11:121613435-121615600 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005251
 lincRNA gene Chr11:128930512-128932677 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005444
 lincRNA gene Chr11:120088667-120090832 (+)
PWK/PhJ MGP_PWKPhJ_G0005133
 lincRNA gene Chr11:116668560-116670734 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005054
 lincRNA gene Chr11:119818978-119821126 (+)
WSB/EiJ MGP_WSBEiJ_G0005232
 lincRNA gene Chr11:120048163-120050328 (+)



Homology
more
  • Human Ortholog
    SNHG20, small nucleolar RNA host gene 20
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG20, small nucleolar RNA host gene 20
  • Synonyms
    C17orf86, LINC00338, NCRNA00338, SCARNA16HG
  • Links
    NCBI Gene ID: 654434

  • Chr Location
    17q25.2; chr17:77086716-77099902 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SNHG20 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    17
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 76972 NCBI Gene Model | MGI Sequence Detail 2173 C57BL/6J ±  kb
transcript NR_027059 RefSeq | MGI Sequence Detail 627 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory