1700061E18Rik Gene Detail

Summary

• Symbol
  1700061E18Rik
• Name
  RIKEN cDNA 1700061E18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924241
  NCBI Gene: 76991
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:41954259-41955271 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924241	lncRNA gene	Chr13:41954259-41955271 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003183	antisense lncRNA gene	Chr13:40306728-40307740 (+)
A/J	MGP_AJ_G0003157	antisense lncRNA gene	Chr13:38969683-38970695 (+)
AKR/J	MGP_AKRJ_G0003139	antisense lncRNA gene	Chr13:40038124-40039136 (+)
BALB/cJ	MGP_BALBcJ_G0003145	antisense lncRNA gene	Chr13:39160357-39161369 (+)
C3H/HeJ	MGP_C3HHeJ_G0003101	antisense lncRNA gene	Chr13:39895182-39896194 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003289	antisense lncRNA gene	Chr13:41580970-41581982 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002817	antisense lncRNA gene	Chr13:37098078-37099092 (+)
CAST/EiJ	MGP_CASTEiJ_G0003069	antisense lncRNA gene	Chr13:39705263-39706278 (+)
CBA/J	MGP_CBAJ_G0003097	antisense lncRNA gene	Chr13:43355275-43356287 (+)
DBA/2J	MGP_DBA2J_G0003103	antisense lncRNA gene	Chr13:38532928-38533940 (+)
FVB/NJ	MGP_FVBNJ_G0003122	antisense lncRNA gene	Chr13:38038068-38039080 (+)
LP/J	MGP_LPJ_G0003178	antisense lncRNA gene	Chr13:40562051-40563063 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003111	antisense lncRNA gene	Chr13:43309255-43310267 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003289	antisense lncRNA gene	Chr13:39672629-39673641 (+)
PWK/PhJ	MGP_PWKPhJ_G0003027	antisense lncRNA gene	Chr13:38623858-38624870 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002972	antisense lncRNA gene	Chr13:38319878-38320887 (+)
WSB/EiJ	MGP_WSBEiJ_G0003101	antisense lncRNA gene	Chr13:39981899-39982899 (+)

Homology

• Gene Tree
  1700061E18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700061E18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085759 (Evidence)
• NCBI Gene
  76991

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085759	Ensembl Gene Model | MGI Sequence Detail	1013	C57BL/6J
transcript	ENSMUST00000154159	Ensembl | MGI Sequence Detail	588	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700061E18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119422	Chr13:41954248-41954258 (+)	-6 bp