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Cacfd1 Gene Detail
Summary
  • Symbol
    Cacfd1
  • Name
    calcium channel flower domain containing 1
  • Synonyms
    5930434B04Rik, mFwe
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924317
    NCBI Gene: 381356
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:26899938-26911101 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 19.17 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    410 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924317
 protein coding gene Chr2:26899867-26911102 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025506
 protein coding gene Chr2:24980488-24991937 (+)
A/J MGP_AJ_G0025483
 protein coding gene Chr2:24033778-24045305 (+)
AKR/J MGP_AKRJ_G0025453
 protein coding gene Chr2:24826876-24838272 (+)
BALB/cJ MGP_BALBcJ_G0025479
 protein coding gene Chr2:24153957-24165222 (+)
C3H/HeJ MGP_C3HHeJ_G0025240
 protein coding gene Chr2:24761490-24772886 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025923
 protein coding gene Chr2:25830299-25841695 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023334
 protein coding gene Chr2:22869400-22880530 (+)
CAST/EiJ MGP_CASTEiJ_G0024703
 protein coding gene Chr2:24637100-24648272 (+)
CBA/J MGP_CBAJ_G0025218
 protein coding gene Chr2:26724016-26735543 (+)
DBA/2J MGP_DBA2J_G0025351
 protein coding gene Chr2:23853583-23864979 (+)
FVB/NJ MGP_FVBNJ_G0025313
 protein coding gene Chr2:23610555-23621789 (+)
LP/J MGP_LPJ_G0025437
 protein coding gene Chr2:24925931-24937325 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025344
 protein coding gene Chr2:26773095-26784478 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025982
 protein coding gene Chr2:24764031-24775427 (+)
PWK/PhJ MGP_PWKPhJ_G0024451
 protein coding gene Chr2:23644683-23656413 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024251
 protein coding gene Chr2:24909035-24920211 (+)
WSB/EiJ MGP_WSBEiJ_G0024772
 protein coding gene Chr2:24877738-24889134 (+)



Homology
more
  • Human Ortholog
    CACFD1, calcium channel flower domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CACFD1, calcium channel flower domain containing 1
  • Synonyms
    C9orf7, D9S2135, FLOWER
  • Links
    NCBI Gene ID: 11094
    neXtProt AC: NX_Q9UGQ2
    UniProt: Q9UGQ2

  • Chr Location
    9q34.2; chr9:133459965-133470848 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit resistance to DMPA/TPA-induced papilloma formation (number and latency) associated with decreased cell proliferation and increased apoptosis of cells in papillomas.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    48
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000015488 Ensembl Gene Model | MGI Sequence Detail 11164 C57BL/6J ±  kb
    transcript ENSMUST00000114006 Ensembl | MGI Sequence Detail 1648 Not Applicable  
    polypeptide ENSMUSP00000109639 Ensembl | MGI Sequence Detail 171 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 48
      cDNA 48

      Microarray probesets 7
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 1
      Gene Ontology 2
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:352716 Li C, et al., Compromised cell competition exhausts neural stem cells pool. Cell Prolif. 2024 Jul 15;:e13710
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory