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5330439A09Rik Gene Detail
Summary
  • Symbol
    5330439A09Rik
  • Name
    RIKEN cDNA 5330439A09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924353
    NCBI Gene: 77103
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr8:55021585-55036592 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 29.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    699 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924353
 lncRNA gene Chr8:55021585-55054022 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004557
 antisense lncRNA gene Chr8:54231450-54266521 (-)
A/J MGP_AJ_G0004537
 antisense lncRNA gene Chr8:51952331-51985670 (-)
AKR/J MGP_AKRJ_G0004521
 antisense lncRNA gene Chr8:53429005-53465606 (-)
BALB/cJ MGP_BALBcJ_G0004522
 antisense lncRNA gene Chr8:52182667-52215359 (-)
C3H/HeJ MGP_C3HHeJ_G0004471
 antisense lncRNA gene Chr8:54122335-54154819 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004672
 antisense lncRNA gene Chr8:56241425-56274887 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004124
 antisense lncRNA gene Chr8:47783264-47814517 (-)
CAST/EiJ MGP_CASTEiJ_G0004431
 antisense lncRNA gene Chr8:53744517-53780082 (-)
CBA/J MGP_CBAJ_G0004465
 antisense lncRNA gene Chr8:58297728-58336625 (-)
DBA/2J MGP_DBA2J_G0004481
 antisense lncRNA gene Chr8:51753164-51785170 (-)
FVB/NJ MGP_FVBNJ_G0004497
 antisense lncRNA gene Chr8:51092663-51125152 (-)
LP/J MGP_LPJ_G0004561
 antisense lncRNA gene Chr8:54213095-54246526 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004486
 antisense lncRNA gene Chr8:59508784-59551654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004671
 antisense lncRNA gene Chr8:53716801-53751999 (-)
PWK/PhJ MGP_PWKPhJ_G0004383
 antisense lncRNA gene Chr8:51290057-51322977 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004325
 antisense lncRNA gene Chr8:52803486-52837314 (-)
WSB/EiJ MGP_WSBEiJ_G0004470
 antisense lncRNA gene Chr8:53963398-54000603 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 77103 NCBI Gene Model | MGI Sequence Detail 15008 C57BL/6J ±  kb
transcript AK019937 GenBank | ENA | DDBJ | MGI Sequence Detail 1121 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 10
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory