8030453O22Rik Gene Detail

Summary

• Symbol
  8030453O22Rik
• Name
  RIKEN cDNA 8030453O22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924459
  NCBI Gene: 77209
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:39504475-39521423 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 18.34 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  532 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924459	lncRNA gene	Chr6:39504447-39521423 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015627	unclassified non-coding RNA gene	Chr6:37921612-37942056 (+)
A/J	MGP_AJ_G0015603	unclassified non-coding RNA gene	Chr6:36258091-36275535 (+)
AKR/J	MGP_AKRJ_G0015566	unclassified non-coding RNA gene	Chr6:37421651-37438543 (+)
BALB/cJ	MGP_BALBcJ_G0015565	unclassified non-coding RNA gene	Chr6:36480908-36498604 (+)
C3H/HeJ	MGP_C3HHeJ_G0015387	unclassified non-coding RNA gene	Chr6:37440231-37457942 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016018	unclassified non-coding RNA gene	Chr6:38862134-38878996 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013752	unclassified non-coding RNA gene	Chr6:34156390-34173198 (+)
CAST/EiJ	MGP_CASTEiJ_G0014943	unclassified non-coding RNA gene	Chr6:37339967-37360645 (+)
CBA/J	MGP_CBAJ_G0015368	unclassified non-coding RNA gene	Chr6:40409554-40428721 (+)
DBA/2J	MGP_DBA2J_G0015462	unclassified non-coding RNA gene	Chr6:36078504-36095878 (+)
FVB/NJ	MGP_FVBNJ_G0015469	unclassified non-coding RNA gene	Chr6:35867223-35884198 (+)
LP/J	MGP_LPJ_G0015543	unclassified non-coding RNA gene	Chr6:37945771-37964795 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015492	unclassified non-coding RNA gene	Chr6:42708969-42728429 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016061	unclassified non-coding RNA gene	Chr6:37369562-37386494 (+)
PWK/PhJ	MGP_PWKPhJ_G0014727	unclassified non-coding RNA gene	Chr6:35765912-35783087 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014516	unclassified non-coding RNA gene	Chr6:37095293-37112048 (+)
WSB/EiJ	MGP_WSBEiJ_G0015047	unclassified non-coding RNA gene	Chr6:37319054-37338793 (+)

Homology

• Gene Tree
  8030453O22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  23
• Gene trapped
  23
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000085058 (Evidence)
• NCBI Gene
  77209

Representative Sequences			Length	Strain/Species
genomic	77209	NCBI Gene Model | MGI Sequence Detail	16949	C57BL/6J
transcript	NR_167679	RefSeq | MGI Sequence Detail	1692	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 8030453O22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55729	Chr6:39504469-39504484 (+)	2 bp