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Rarres1 Gene Detail
Summary
  • Symbol
    Rarres1
  • Name
    retinoic acid receptor responder (tazarotene induced) 1
  • Synonyms
    5430417P09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924461
    NCBI Gene: 109222
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:67386305-67422856 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 30.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1393 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924461
 protein coding gene Chr3:67386219-67422856 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027282
 protein coding gene Chr3:66635565-66673125 (-)
A/J MGP_AJ_G0027244
 protein coding gene Chr3:64671237-64710127 (-)
AKR/J MGP_AKRJ_G0027212
 protein coding gene Chr3:66067958-66106400 (-)
BALB/cJ MGP_BALBcJ_G0027255
 protein coding gene Chr3:64546727-64584555 (-)
C3H/HeJ MGP_C3HHeJ_G0026999
 protein coding gene Chr3:66308154-66351369 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027701
 protein coding gene Chr3:69125001-69164877 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025054
 protein coding gene Chr3:61001744-61036899 (-)
CAST/EiJ MGP_CASTEiJ_G0026446
 protein coding gene Chr3:66255799-66295011 (-)
CBA/J MGP_CBAJ_G0026974
 protein coding gene Chr3:71283833-71328461 (-)
DBA/2J MGP_DBA2J_G0027110
 protein coding gene Chr3:64184974-64226836 (-)
FVB/NJ MGP_FVBNJ_G0027078
 protein coding gene Chr3:62817889-62856055 (-)
LP/J MGP_LPJ_G0027218
 protein coding gene Chr3:67558107-67604318 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027097
 protein coding gene Chr3:75940839-75981923 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027759
 protein coding gene Chr3:65944165-65986342 (-)
PWK/PhJ MGP_PWKPhJ_G0026180
 protein coding gene Chr3:63922825-63959032 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025996
 protein coding gene Chr3:65048797-65084681 (-)
WSB/EiJ MGP_WSBEiJ_G0026524
 protein coding gene Chr3:66058514-66102644 (-)



Homology
more
  • Human Ortholog
    RARRES1, retinoic acid receptor responder 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RARRES1, retinoic acid receptor responder 1
  • Synonyms
    LXNL, PERG-1, TIG1
  • Links
    NCBI Gene ID: 5918
    neXtProt AC: NX_P49788
    UniProt: P49788

  • Chr Location
    3q25.32; chr3:158696892-158732489 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Rarres1 mouse models

Human Disease Mouse Models
      
IDs
 View 3 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    13
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000049404 Ensembl Gene Model | MGI Sequence Detail 36552 C57BL/6J ±  kb
    transcript ENSMUST00000054825 Ensembl | MGI Sequence Detail 1325 Not Applicable  
    polypeptide ENSMUSP00000056728 Ensembl | MGI Sequence Detail 283 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2139776
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 2
      Diseases 2
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory