9430021M05Rik Gene Detail

Summary

• Symbol
  9430021M05Rik
• Name
  RIKEN cDNA 9430021M05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1924538
  NCBI Gene: 77288
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:162503083-162517124 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 83.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  479 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924538	lncRNA gene	Chr2:162503083-162517125 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015488	unclassified non-coding RNA gene	Chr2:167928981-167934921 (+)
A/J	MGP_AJ_G0015465	unclassified non-coding RNA gene	Chr2:161178432-161184367 (+)
AKR/J	MGP_AKRJ_G0015429	unclassified non-coding RNA gene	Chr2:165935191-165941144 (+)
BALB/cJ	MGP_BALBcJ_G0015428	unclassified non-coding RNA gene	Chr2:161509817-161515771 (+)
C3H/HeJ	MGP_C3HHeJ_G0015251	unclassified non-coding RNA gene	Chr2:166297395-166305201 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015882	unclassified non-coding RNA gene	Chr2:172873517-172880859 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013620	unclassified non-coding RNA gene	Chr2:154494570-154500515 (+)
CAST/EiJ	MGP_CASTEiJ_G0014803	unclassified non-coding RNA gene	Chr2:166659489-166665338 (+)
CBA/J	MGP_CBAJ_G0015232	unclassified non-coding RNA gene	Chr2:179107869-179113715 (+)
DBA/2J	MGP_DBA2J_G0015326	unclassified non-coding RNA gene	Chr2:160366418-160372361 (+)
FVB/NJ	MGP_FVBNJ_G0015333	unclassified non-coding RNA gene	Chr2:158735726-158741666 (+)
LP/J	MGP_LPJ_G0015404	unclassified non-coding RNA gene	Chr2:168059670-168065474 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015357	unclassified non-coding RNA gene	Chr2:182808690-182815853 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015922	unclassified non-coding RNA gene	Chr2:165808736-165814740 (+)
PWK/PhJ	MGP_PWKPhJ_G0014591	unclassified non-coding RNA gene	Chr2:159900790-159907224 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014379	unclassified non-coding RNA gene	Chr2:164682257-164695154 (+)
WSB/EiJ	MGP_WSBEiJ_G0014910	unclassified non-coding RNA gene	Chr2:166686698-166694479 (+)

Homology

• Gene Tree
  9430021M05Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000054457 (Evidence)
• NCBI Gene
  77288

Representative Sequences			Length	Strain/Species
genomic	77288	NCBI Gene Model | MGI Sequence Detail	14042	C57BL/6J
transcript	NR_033569	RefSeq | MGI Sequence Detail	2148	C57BL/6
polypeptide	Q8BT43	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9430021M05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21417	Chr2:162503112-162503159 (+)	53 bp
Tssr21418	Chr2:162503164-162503180 (+)	89 bp
Tssr21419	Chr2:162503224-162503240 (+)	149 bp