C330018D20Rik MGI Mouse Gene Detail - MGI:1924672

Symbol

C330018D20Rik
Name

RIKEN cDNA C330018D20 gene

Feature Type

protein coding gene
IDs

MGI:1924672
NCBI Gene: 77422
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr18:57088905-57108440 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 31.22 cM, cytoband D2
Mapping Data

3 experiments

SNPs within 2kb

602 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924672	protein coding gene	Chr18:57088900-57108460 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0024446	protein coding gene	Chr18:56360954-56381467 (-)
A/J	MGP_AJ_G0024412	protein coding gene	Chr18:54126583-54148622 (-)
AKR/J	MGP_AKRJ_G0024382	protein coding gene	Chr18:55613519-55634382 (-)
BALB/cJ	MGP_BALBcJ_G0024412	protein coding gene	Chr18:54307426-54326839 (-)
C3H/HeJ	MGP_C3HHeJ_G0024179	protein coding gene	Chr18:55833826-55853331 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0024858	protein coding gene	Chr18:58149063-58168550 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022290	protein coding gene	Chr18:53747824-53768515 (-)
CAST/EiJ	MGP_CASTEiJ_G0023653	protein coding gene	Chr18:55846024-55865903 (-)
CBA/J	MGP_CBAJ_G0024149	protein coding gene	Chr18:59967569-59986954 (-)
DBA/2J	MGP_DBA2J_G0024279	protein coding gene	Chr18:53820170-53839665 (-)
FVB/NJ	MGP_FVBNJ_G0024246	protein coding gene	Chr18:53215813-53235590 (-)
LP/J	MGP_LPJ_G0024364	protein coding gene	Chr18:56324078-56343508 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024276	protein coding gene	Chr18:61623505-61644532 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024905	protein coding gene	Chr18:55742645-55764769 (-)
PWK/PhJ	MGP_PWKPhJ_G0023397	protein coding gene	Chr18:53841883-53861599 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0023203	protein coding gene	Chr18:55804257-55826505 (-)
WSB/EiJ	MGP_WSBEiJ_G0023716	protein coding gene	Chr18:55657413-55680120 (-)

Human Ortholog

C5orf63, chromosome 5 open reading frame 63

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C5orf63, chromosome 5 open reading frame 63
Synonyms

YDR286C
Links

HGNC:40051

NCBI Gene ID: 401207

neXtProt AC: NX_A6NC05

UniProt: A6NC05
Chr Location

5q23.2; chr5:127042562-127073506 (-) GRCh38

MGI Vertebrate Homology

C330018D20Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C5orf63
Gene Tree

C330018D20Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

6
Gene trapped

1
Spontaneous

1
Targeted

4
Genomic Mutations

1 involving C330018D20Rik
Incidental Mutations

CvDC
Find Mice (IMSR)

11 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

39

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

ZFIN si:dkey-184a18.5

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All Sequences

45
RefSeq

4
UniProt

1
CCDS

CCDS50293.1

Ensembl

ENSMUSG00000024592 (Evidence)
NCBI Gene

77422

			Length	Strain/Species	Flank
genomic	ENSMUSG00000024592	Ensembl Gene Model \| MGI Sequence Detail	19536	C57BL/6J	± kb
transcript	ENSMUST00000025488	Ensembl \| MGI Sequence Detail	2400	Not Applicable
polypeptide	ENSMUSP00000025488	Ensembl \| MGI Sequence Detail	115	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000059686 glutaredoxin-like protein C5orf63

(term hierarchy)
PDB

1WJK
InterPro Domains

IPR008554 Glutaredoxin-like

IPR052565 Glutaredoxin-like YDR286C

IPR036249 Thioredoxin-like superfamily

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All nucleic 39

cDNA 39

Microarray probesets 6

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MGI:2147300

Summaries

All 28

Gene Ontology 1

Phenotypes 6
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for C330018D20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153405	Chr18:57108405-57108448 (-)	13 bp
Tssr153404	Chr18:57107200-57107225 (-)	1,227 bp
Tssr153403	Chr18:57107129-57107139 (-)	1,306 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24