Redrum Gene Detail

Summary

• Symbol
  Redrum
• Name
  Redrum, erythroid developmental long intergenic non-protein coding transcript
• Synonyms
  9430076G02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1924683
  NCBI Gene: 77433
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:54555367-54586366 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  880 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924683	lncRNA gene	Chr18:54555360-54586377 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005789	lincRNA gene	Chr18:53619103-53654677 (+)
A/J	MGP_AJ_G0005778	lincRNA gene	Chr18:51548082-51578906 (+)
AKR/J	MGP_AKRJ_G0005755	lincRNA gene	Chr18:52983371-53014033 (+)
BALB/cJ	MGP_BALBcJ_G0005757	lincRNA gene	Chr18:51728848-51760252 (+)
C3H/HeJ	MGP_C3HHeJ_G0005705	lincRNA gene	Chr18:53145043-53178003 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005918	lincRNA gene	Chr18:55388003-55419925 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005261	lincRNA gene	Chr18:51267240-51298604 (+)
CAST/EiJ	MGP_CASTEiJ_G0005646	lincRNA gene	Chr18:53130406-53168593 (+)
CBA/J	MGP_CBAJ_G0005692	lincRNA gene	Chr18:57058481-57093766 (+)
DBA/2J	MGP_DBA2J_G0005710	lincRNA gene	Chr18:51250665-51281202 (+)
FVB/NJ	MGP_FVBNJ_G0005737	lincRNA gene	Chr18:50667574-50698438 (+)
LP/J	MGP_LPJ_G0005791	lincRNA gene	Chr18:53637089-53670900 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005723	lincRNA gene	Chr18:58840361-58870875 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005916	lincRNA gene	Chr18:53027829-53058387 (+)
PWK/PhJ	MGP_PWKPhJ_G0005591	lincRNA gene	Chr18:51263502-51294262 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005507	lincRNA gene	Chr18:53164432-53198020 (+)
WSB/EiJ	MGP_WSBEiJ_G0005698	lincRNA gene	Chr18:52970255-53004593 (+)

Homology

• Gene Tree
  Redrum
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Redrum
• Find Mice (IMSR)
  0 strains or lines available

Mice exhibit normal normal erythropoiesis.

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  726
• Tissues
  12
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000096982 (Evidence)
• NCBI Gene
  77433

Representative Sequences			Length	Strain/Species
genomic	77433	NCBI Gene Model | MGI Sequence Detail	31000	C57BL/6J
transcript	NR_040338	RefSeq | MGI Sequence Detail	2228	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Redrum:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151109	Chr18:54555358-54555412 (+)	18 bp
Tssr151110	Chr18:54555442-54555453 (+)	81 bp
Tssr151111	Chr18:54560090-54560094 (+)	4,725 bp