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C430039J16Rik Gene Detail
Summary
  • Symbol
    C430039J16Rik
  • Name
    RIKEN cDNA C430039J16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1924873
    NCBI Gene: 77623
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr13:97419691-97422068 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 50.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    186 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924873
 lncRNA gene Chr13:97419691-97422068 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005494
 lincRNA gene Chr13:98891849-98894582 (+)
A/J MGP_AJ_G0005480
 lincRNA gene Chr13:95146096-95148854 (+)
AKR/J MGP_AKRJ_G0005459
 lincRNA gene Chr13:98049024-98051757 (+)
BALB/cJ MGP_BALBcJ_G0005461
 lincRNA gene Chr13:95831067-95833819 (+)
C3H/HeJ MGP_C3HHeJ_G0005409
 lincRNA gene Chr13:97771841-97774572 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005617
 lincRNA gene Chr13:101865675-101868427 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004991
 lincRNA gene Chr13:90908609-90911574 (+)
CAST/EiJ MGP_CASTEiJ_G0005351
 lincRNA gene Chr13:97100806-97103578 (+)
CBA/J MGP_CBAJ_G0005398
 lincRNA gene Chr13:105952619-105955375 (+)
DBA/2J MGP_DBA2J_G0005414
 lincRNA gene Chr13:94900858-94903614 (+)
FVB/NJ MGP_FVBNJ_G0005440
 lincRNA gene Chr13:93667644-93670377 (+)
LP/J MGP_LPJ_G0005497
 lincRNA gene Chr13:98999690-99002423 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005423
 lincRNA gene Chr13:106282857-106285609 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005617
 lincRNA gene Chr13:97476423-97479154 (+)
PWK/PhJ MGP_PWKPhJ_G0005302
 lincRNA gene Chr13:93693274-93696150 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005221
 lincRNA gene Chr13:93794104-93796858 (+)
WSB/EiJ MGP_WSBEiJ_G0005401
 lincRNA gene Chr13:97929584-97932320 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    21
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097932 Ensembl Gene Model | MGI Sequence Detail 2378 C57BL/6J ±  kb
transcript ENSMUST00000181148 Ensembl | MGI Sequence Detail 658 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory