Ptprtos MGI Mouse Gene Detail - MGI:1924895 - protein tyrosine phosphatase receptor type T, opposite strand

Sequence Map

Chr2:162232733-162235865 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924895	antisense lncRNA gene	Chr2:162232733-162235866 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003685	antisense lncRNA gene	Chr2:167644925-167648053 (+)
A/J	MGP_AJ_G0003667	antisense lncRNA gene	Chr2:160914776-160917905 (+)
AKR/J	MGP_AKRJ_G0003645	antisense lncRNA gene	Chr2:165671899-165675029 (+)
BALB/cJ	MGP_BALBcJ_G0003656	antisense lncRNA gene	Chr2:161243632-161246761 (+)
C3H/HeJ	MGP_C3HHeJ_G0003603	antisense lncRNA gene	Chr2:166023901-166027030 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003795	antisense lncRNA gene	Chr2:172596521-172599653 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003301	antisense lncRNA gene	Chr2:154233825-154236918 (+)
CAST/EiJ	MGP_CASTEiJ_G0003566	antisense lncRNA gene	Chr2:166383952-166387081 (+)
CBA/J	MGP_CBAJ_G0003600	antisense lncRNA gene	Chr2:178814937-178818066 (+)
DBA/2J	MGP_DBA2J_G0003607	antisense lncRNA gene	Chr2:160097063-160100192 (+)
FVB/NJ	MGP_FVBNJ_G0003628	antisense lncRNA gene	Chr2:158466937-158470066 (+)
LP/J	MGP_LPJ_G0003685	antisense lncRNA gene	Chr2:167777966-167781094 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003616	antisense lncRNA gene	Chr2:182530612-182533741 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003795	antisense lncRNA gene	Chr2:165528704-165531836 (+)
PWK/PhJ	MGP_PWKPhJ_G0003521	antisense lncRNA gene	Chr2:159634434-159637569 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003464	antisense lncRNA gene	Chr2:164402585-164405725 (+)
WSB/EiJ	MGP_WSBEiJ_G0003600	antisense lncRNA gene	Chr2:166405739-166408869 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000084919	Ensembl Gene Model \| MGI Sequence Detail	3133	C57BL/6J	± kb
	transcript	ENSMUST00000151688	Ensembl \| MGI Sequence Detail	630	Not Applicable

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Summaries

All 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Ptprtos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr733	Chr2:162234311-162234313 (+)	1,579 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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