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Smim41 Gene Detail
Summary
  • Symbol
    Smim41
  • Name
    small integral membrane protein 41
  • Synonyms
    6030408B16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924967
    NCBI Gene: 77717
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101191113-101195307 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.68 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    184 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924967
 protein coding gene Chr15:101191040-101195307 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005627
 lincRNA gene Chr15:103344439-103348647 (+)
A/J MGP_AJ_G0005614
 lincRNA gene Chr15:99257169-99261377 (+)
AKR/J MGP_AKRJ_G0005593
 lincRNA gene Chr15:102284779-102288999 (+)
BALB/cJ MGP_BALBcJ_G0005594
 lincRNA gene Chr15:99358767-99362975 (+)
C3H/HeJ MGP_C3HHeJ_G0005541
 lincRNA gene Chr15:102366334-102370542 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005752
 lincRNA gene Chr15:107183934-107188154 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005117
 lincRNA gene Chr15:94992296-94996439 (+)
CAST/EiJ MGP_CASTEiJ_G0005485
 lincRNA gene Chr15:103217900-103222098 (+)
CBA/J MGP_CBAJ_G0005531
 lincRNA gene Chr15:110906100-110910308 (+)
DBA/2J MGP_DBA2J_G0005546
 lincRNA gene Chr15:98588632-98592852 (+)
FVB/NJ MGP_FVBNJ_G0005573
 lincRNA gene Chr15:97639789-97644009 (+)
LP/J MGP_LPJ_G0005630
 lincRNA gene Chr15:103484847-103489055 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005558
 lincRNA gene Chr15:114596011-114600231 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005752
 lincRNA gene Chr15:102308791-102312993 (+)
PWK/PhJ MGP_PWKPhJ_G0005434
 lincRNA gene Chr15:98745179-98749405 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005352
 lincRNA gene Chr15:102206656-102211232 (+)
WSB/EiJ MGP_WSBEiJ_G0005535
 lincRNA gene Chr15:102931969-102936263 (+)



Homology
more
  • Human Ortholog
    SMIM41, small integral membrane protein 41
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM41, small integral membrane protein 41
  • Links
    NCBI Gene ID: 113523638

  • Chr Location
    12q13.13; chr12:52079704-52108255 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Smim41
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000075408 Ensembl Gene Model | MGI Sequence Detail 4195 C57BL/6J ±  kb
transcript ENSMUST00000191426 Ensembl | MGI Sequence Detail 1947 Not Applicable  
polypeptide ENSMUSP00000153762 Ensembl | MGI Sequence Detail 89 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR043383 Reprimo family
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
Other
Accession IDs
less
MGI:2145959, MGI:6284519
References
more
  • Summaries
    All 42
    Diseases 1
    Phenotypes 22
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory