9930111H07Rik Gene Detail

Summary

• Symbol
  9930111H07Rik
• Name
  RIKEN cDNA 9930111H07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925012
  NCBI Gene: 77762
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85702992-85712415 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  367 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925012	lncRNA gene	Chr1:85702992-85712415 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004893	lincRNA gene	Chr1:86985294-86994760 (+)
A/J	MGP_AJ_G0004875	lincRNA gene	Chr1:83766339-83776438 (+)
AKR/J	MGP_AKRJ_G0004853	lincRNA gene	Chr1:86193561-86203070 (+)
BALB/cJ	MGP_BALBcJ_G0004856	lincRNA gene	Chr1:83892088-83901653 (+)
C3H/HeJ	MGP_C3HHeJ_G0004805	lincRNA gene	Chr1:86454423-86464685 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005007	lincRNA gene	Chr1:90288944-90298345 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004431	lincRNA gene	Chr1:78244632-78253958 (+)
CAST/EiJ	MGP_CASTEiJ_G0004756	lincRNA gene	Chr1:85682262-85691643 (+)
CBA/J	MGP_CBAJ_G0004797	lincRNA gene	Chr1:93112378-93121830 (+)
DBA/2J	MGP_DBA2J_G0004816	lincRNA gene	Chr1:83084620-83094002 (+)
FVB/NJ	MGP_FVBNJ_G0004836	lincRNA gene	Chr1:82129372-82139153 (+)
LP/J	MGP_LPJ_G0004894	lincRNA gene	Chr1:88090631-88100733 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004821	lincRNA gene	Chr1:96403282-96414086 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005011	lincRNA gene	Chr1:86313724-86324499 (+)
PWK/PhJ	MGP_PWKPhJ_G0004709	lincRNA gene	Chr1:82365460-82375627 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004634	lincRNA gene	Chr1:85284162-85294728 (+)
WSB/EiJ	MGP_WSBEiJ_G0004801	lincRNA gene	Chr1:85975993-85986091 (+)

Homology

• Gene Tree
  9930111H07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9930111H07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100217 (Evidence)
• NCBI Gene
  77762

Representative Sequences			Length	Strain/Species
genomic	77762	NCBI Gene Model | MGI Sequence Detail	9424	C57BL/6J
transcript	NR_108086	RefSeq | MGI Sequence Detail	821	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9930111H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7694	Chr1:85707789-85707805 (+)	4,805 bp