Particl Gene Detail

Summary

• Symbol
  Particl
• Name
  promoter of Mat2a antisense radiation induced circulating long non-coding RNA
• Synonyms
  4930414L22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1925358
  NCBI Gene: 78108
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72416034-72417593 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925358	lncRNA gene	Chr6:72415666-72417598 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001945	unclassified gene	Chr6:72992414-72993973 (+)
A/J	MGP_AJ_G0001922	unclassified gene	Chr6:70161633-70163192 (+)
AKR/J	MGP_AKRJ_G0001909	unclassified gene	Chr6:72229499-72231062 (+)
BALB/cJ	MGP_BALBcJ_G0001919	unclassified gene	Chr6:70189685-70191244 (+)
C3H/HeJ	MGP_C3HHeJ_G0002006	unclassified gene	Chr6:112011994-112013554 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002040	unclassified gene	Chr6:74908265-74909824 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001696	unclassified gene	Chr6:69308229-69309780 (+)
CAST/EiJ	MGP_CASTEiJ_G0001863	unclassified gene	Chr6:72092543-72094102 (+)
CBA/J	MGP_CBAJ_G0001889	unclassified gene	Chr6:77956606-77958166 (+)
DBA/2J	MGP_DBA2J_G0001893	unclassified gene	Chr6:69555929-69557489 (+)
FVB/NJ	MGP_FVBNJ_G0001901	unclassified gene	Chr6:68946919-68948478 (+)
LP/J	MGP_LPJ_G0001948	unclassified gene	Chr6:72901053-72902612 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001879	unclassified gene	Chr6:81354909-81356472 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002030	unclassified gene	Chr6:72040075-72041634 (+)
PWK/PhJ	MGP_PWKPhJ_G0001826	unclassified gene	Chr6:68466977-68468539 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001788	unclassified gene	Chr6:70768118-70769672 (+)
WSB/EiJ	MGP_WSBEiJ_G0001889	unclassified gene	Chr6:72414336-72415895 (+)

Homology

• Gene Tree
  Particl
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Particl
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  24

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000108591 (Evidence)
• NCBI Gene
  78108

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108591	Ensembl Gene Model | MGI Sequence Detail	1560	C57BL/6J
transcript	NR_046011	RefSeq | MGI Sequence Detail	1933	ZRU/MplStud

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2141416

References

• Summaries
  All 21

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Particl:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57134	Chr6:72416017-72416048 (+)	-1 bp