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3110004A20Rik Gene Detail
Summary
  • Symbol
    3110004A20Rik
  • Name
    RIKEN cDNA 3110004A20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925593
    NCBI Gene: 78343
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr11:40365545-40366504 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 24.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    86 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925593
 lncRNA gene Chr11:40365543-40366505 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005211
 lincRNA gene Chr11:39133826-39134785 (-)
A/J MGP_AJ_G0005196
 lincRNA gene Chr11:37645503-37646462 (-)
AKR/J MGP_AKRJ_G0005174
 lincRNA gene Chr11:38764383-38765341 (-)
BALB/cJ MGP_BALBcJ_G0005176
 lincRNA gene Chr11:37840662-37841621 (-)
C3H/HeJ MGP_C3HHeJ_G0005125
 lincRNA gene Chr11:38779786-38780745 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005328
 lincRNA gene Chr11:40314433-40315392 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004723
 lincRNA gene Chr11:35890001-35891000 (-)
CAST/EiJ MGP_CASTEiJ_G0005072
 lincRNA gene Chr11:38809795-38810794 (-)
CBA/J MGP_CBAJ_G0005115
 lincRNA gene Chr11:42212558-42213517 (-)
DBA/2J MGP_DBA2J_G0005132
 lincRNA gene Chr11:37373370-37374329 (-)
FVB/NJ MGP_FVBNJ_G0005157
 lincRNA gene Chr11:37150125-37151084 (-)
LP/J MGP_LPJ_G0005213
 lincRNA gene Chr11:39359341-39360300 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005140
 lincRNA gene Chr11:43499984-43500943 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005331
 lincRNA gene Chr11:38810925-38811884 (-)
PWK/PhJ MGP_PWKPhJ_G0005023
 lincRNA gene Chr11:37488247-37489240 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004946
 lincRNA gene Chr11:38647284-38648277 (-)
WSB/EiJ MGP_WSBEiJ_G0005120
 lincRNA gene Chr11:38552144-38553103 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 3110004A20Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085588 Ensembl Gene Model | MGI Sequence Detail 960 C57BL/6J ±  kb
transcript ENSMUST00000123904 Ensembl | MGI Sequence Detail 385 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 11
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory