2900041M22Rik Gene Detail

Summary

• Symbol
  2900041M22Rik
• Name
  RIKEN cDNA 2900041M22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925653
  NCBI Gene: 78403
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:117502073-117504243 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925653	lncRNA gene	Chr11:117502073-117504683 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015221	unclassified non-coding RNA gene	Chr11:121872031-121874612 (+)
A/J	MGP_AJ_G0015195	unclassified non-coding RNA gene	Chr11:116477357-116479936 (+)
AKR/J	MGP_AKRJ_G0015158	unclassified non-coding RNA gene	Chr11:120022193-120024774 (+)
BALB/cJ	MGP_BALBcJ_G0015157	unclassified non-coding RNA gene	Chr11:116846176-116848786 (+)
C3H/HeJ	MGP_C3HHeJ_G0014981	unclassified non-coding RNA gene	Chr11:120299916-120302497 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015614	unclassified non-coding RNA gene	Chr11:125594469-125597079 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013356	unclassified non-coding RNA gene	Chr11:113493295-113495840 (+)
CAST/EiJ	MGP_CASTEiJ_G0014534	unclassified non-coding RNA gene	Chr11:121737206-121739753 (+)
CBA/J	MGP_CBAJ_G0014960	unclassified non-coding RNA gene	Chr11:130545923-130548504 (+)
DBA/2J	MGP_DBA2J_G0015053	unclassified non-coding RNA gene	Chr11:115879696-115882277 (+)
FVB/NJ	MGP_FVBNJ_G0015064	unclassified non-coding RNA gene	Chr11:115497947-115500528 (+)
LP/J	MGP_LPJ_G0015134	unclassified non-coding RNA gene	Chr11:122203632-122206213 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015091	unclassified non-coding RNA gene	Chr11:129519842-129522419 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015653	unclassified non-coding RNA gene	Chr11:120664111-120666692 (+)
PWK/PhJ	MGP_PWKPhJ_G0014326	unclassified non-coding RNA gene	Chr11:117234109-117236664 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014113	unclassified non-coding RNA gene	Chr11:120397087-120399642 (+)
WSB/EiJ	MGP_WSBEiJ_G0014637	unclassified non-coding RNA gene	Chr11:120635387-120637970 (+)

Homology

• Gene Tree
  2900041M22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000054418 (Evidence)
• NCBI Gene
  78403

Representative Sequences			Length	Strain/Species
genomic	78403	NCBI Gene Model | MGI Sequence Detail	2171	C57BL/6J
transcript	NR_015489	RefSeq | MGI Sequence Detail	1344	C57BL/6
polypeptide	Q8CEL9	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9