About   Help   FAQ
3300005D01Rik Gene Detail
Summary
  • Symbol
    3300005D01Rik
  • Name
    RIKEN cDNA 3300005D01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925762
    NCBI Gene: 78512
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:5848932-5853516 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 3.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    267 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925762
 lncRNA gene Chr17:5848932-5853517 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005686
 lincRNA gene Chr17:2945511-2950052 (+)
A/J MGP_AJ_G0005673
 lincRNA gene Chr17:2884076-2888601 (+)
AKR/J MGP_AKRJ_G0005652
 lincRNA gene Chr17:2943169-2947686 (+)
BALB/cJ MGP_BALBcJ_G0005653
 lincRNA gene Chr17:2845616-2850133 (+)
C3H/HeJ MGP_C3HHeJ_G0005600
 lincRNA gene Chr17:2984009-2988520 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005810
 lincRNA gene Chr17:3098605-3103219 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005167
 lincRNA gene Chr17:2689776-2694494 (+)
CAST/EiJ MGP_CASTEiJ_G0005543
 lincRNA gene Chr17:2993149-2999067 (+)
CBA/J MGP_CBAJ_G0005588
 lincRNA gene Chr17:3240455-3244973 (+)
DBA/2J MGP_DBA2J_G0005606
 lincRNA gene Chr17:2738362-2742874 (+)
FVB/NJ MGP_FVBNJ_G0005632
 lincRNA gene Chr17:2779770-2784266 (+)
LP/J MGP_LPJ_G0005688
 lincRNA gene Chr17:3073710-3079512 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005617
 lincRNA gene Chr17:3080180-3086978 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005811
 lincRNA gene Chr17:2973513-2978025 (+)
PWK/PhJ MGP_PWKPhJ_G0005489
 lincRNA gene Chr17:2814021-2819007 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005408
 lincRNA gene Chr17:2943676-2948238 (+)
WSB/EiJ MGP_WSBEiJ_G0005594
 lincRNA gene Chr17:2933339-2937917 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096965 Ensembl Gene Model | MGI Sequence Detail 4585 C57BL/6J ±  kb
transcript ENSMUST00000181484 Ensembl | MGI Sequence Detail 1174 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
References
more
  • Summaries
    All 11
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory