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Platr21 Gene Detail
Summary
  • Symbol
    Platr21
  • Name
    pluripotency associated transcript 21
  • Synonyms
    C330013F16Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925776
    NCBI Gene: 78526
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:138140975-138258487 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 61.30 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2643 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925776
 lncRNA gene ChrX:138140975-138258514 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015795
 unclassified non-coding RNA gene ChrX:136716835-136851182 (-)
A/J MGP_AJ_G0015770
 unclassified non-coding RNA gene ChrX:136105377-136230523 (-)
AKR/J MGP_AKRJ_G0015735
 unclassified non-coding RNA gene ChrX:140497881-140627899 (-)
BALB/cJ MGP_BALBcJ_G0015733
 unclassified non-coding RNA gene ChrX:134460202-134591289 (-)
C3H/HeJ MGP_C3HHeJ_G0015552
 unclassified non-coding RNA gene ChrX:136742893-136874840 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016188
 unclassified non-coding RNA gene ChrX:140766137-140890088 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013909
 unclassified non-coding RNA gene ChrX:127895862-128013498 (-)
CAST/EiJ MGP_CASTEiJ_G0015111
 unclassified non-coding RNA gene ChrX:117558879-117685407 (-)
CBA/J MGP_CBAJ_G0015532
 unclassified non-coding RNA gene ChrX:145035739-145170174 (-)
DBA/2J MGP_DBA2J_G0015630
 unclassified non-coding RNA gene ChrX:135308564-135431677 (-)
FVB/NJ MGP_FVBNJ_G0015635
 unclassified non-coding RNA gene ChrX:134534986-134658646 (-)
LP/J MGP_LPJ_G0015713
 unclassified non-coding RNA gene ChrX:137688948-137836325 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015660
 unclassified non-coding RNA gene ChrX:152562137-152701403 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016233
 unclassified non-coding RNA gene ChrX:136053061-136178588 (-)
PWK/PhJ MGP_PWKPhJ_G0014890
 unclassified non-coding RNA gene ChrX:114500601-114626826 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014676
 unclassified non-coding RNA gene ChrX:118093547-118218682 (-)
WSB/EiJ MGP_WSBEiJ_G0015211
 unclassified non-coding RNA gene ChrX:134356173-134483815 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 78526 NCBI Gene Model | MGI Sequence Detail 117513 C57BL/6J ±  kb
transcript NR_045455 RefSeq | MGI Sequence Detail 3511 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 14
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory